mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 753,125 | 0 | T | A | 52.0% | 8.4 / 32.8 | 25 | intergenic (‑330/+60) | ybgD/gltA | putative fimbrial protein YbgD/citrate synthase |
| * | NC_000913 | 4,604,344 | 0 | C | T | 39.2% | 56.3 / 34.8 | 51 | S62F (TCT→TTT) | bglJ | DNA‑binding transcriptional regulator BglJ |
| * | NC_000913 | 1,068,173 | 0 | T | G | 37.5% | 56.6 / 19.9 | 40 | G31G (GGT→GGG) | ymdF | conserved protein YmdF |
| * | NC_000913 | 4,296,060 | 0 | C | T | 29.7% | 57.3 / 25.9 | 37 | intergenic (+266/+376) | gltP/yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| * | NC_000913 | 4,429,984 | 0 | T | G | 28.1% | 61.0 / 12.4 | 32 | L41V (TTG→GTG) | cycA | serine/alanine/glycine/cycloserine:H(+)symporter |
| * | NC_000913 | 4,287,719 | 0 | T | A | 25.8% | 57.5 / 10.2 | 31 | intergenic (‑348/‑45) | acs/nrfA | acetyl‑CoA synthetase (AMP‑forming)/cytochrome c552 nitrite reductase |
| * | NC_000913 | 2,326,450 | 0 | T | G | 22.2% | 84.8 / 10.7 | 36 | G114G (GGT→GGG) | atoB | acetyl‑CoA acetyltransferase |
| * | NC_000913 | 782,879 | 0 | T | G | 20.0% | 141.2 / 10.9 | 55 | G265G (GGT→GGG) | nadA | quinolinate synthase |
| Marginal new junction evidence (sorted from low to high skew) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 58 (1.140) | 9 (0.200) | 9/244 | 2.9 | 16.8% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 38 (0.850) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | 374922 = | NA (NA) | 5 (0.130) | 4/202 | 4.0 | NA | intergenic (+41/‑537) | mhpE/mhpT | 4‑hydroxy‑2‑oxovalerate aldolase/3‑hydroxyphenylpropionate/3‑ hydroxycinnamate:H(+) symporter |
| ? | NC_000913 | 377430 = | NA (NA) | intergenic (+119/+105) | yaiL/frmB | DUF2058 domain‑containing protein YaiL/S‑formylglutathione hydrolase FrmB | |||||
| * | ? | NC_000913 | = 1207805 | 49 (0.960) | 5 (0.110) | 5/244 | 4.2 | 10.9% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 38 (0.850) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 4542690 | 47 (0.920) | 3 (0.060) | 3/258 | 5.3 | 6.3% | intergenic (+57/‑425) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit |
| ? | NC_000913 | = 4542986 | 46 (0.970) | intergenic (+353/‑129) | fimE/fimA | regulator for fimA/type 1 fimbriae major subunit | |||||
| * | ? | NC_000913 | = 3138703 | 56 (1.100) | 3 (0.060) | 3/272 | 5.5 | 5.1% | intergenic (‑181/‑24) | gss/yghU | fused glutathionylspermidine amidase/glutathionylspermidine synthetase/disulfide reductase/organic hydroperoxide reductase |
| ? | NC_000913 | 3138707 = | 56 (1.120) | intergenic (‑185/‑20) | gss/yghU | fused glutathionylspermidine amidase/glutathionylspermidine synthetase/disulfide reductase/organic hydroperoxide reductase | |||||