mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Predicted mutations | |||||
|---|---|---|---|---|---|
| evidence | position | mutation | annotation | gene | description |
| RA | 208,199 | G→T | R1025L (CGG→CTG) | dnaE → | DNA polymerase III subunit alpha |
| MC JC | 257,908 | Δ776 bp | insB9–[crl] | insB9, insA9, [crl] | |
| RA | 386,315 | G→T | G37C (GGC→TGC) | tauB → | taurine ABC transporter ATP binding subunit |
| RA | 696,453 | C→A | noncoding (52/75 nt) | glnX ← | tRNA‑Gln |
| RA | 889,923 | A→G | intergenic (‑104/‑166) | ybjL ← / → ybjM | putative transport protein YbjL/putative inner membrane protein |
| RA | 1,189,950 | G→T | G166G (GGC→GGA) | phoP ← | DNA‑binding transcriptional dual regulator PhoP |
| RA | 1,678,604 | G→T | A60S (GCA→TCA) | ydgH → | DUF1471 domain‑containing protein YdgH |
| RA | 1,692,611 | C→A | A81S (GCG→TCG) | uidC ← | outer membrane porin family protein |
| RA | 1,853,481 | C→A | V167L (GTG→TTG) | ydjE ← | putative transporter YdjE |
| JC JC | 1,879,829 | Δ1 bp :: IS186 (–) +6 bp :: Δ1 bp | coding (115‑120/360 nt) | yeaR ← | DUF1971 domain‑containing protein YeaR |
| MC JC | 1,978,503 | Δ776 bp | insB‑5–insA‑5 | insB‑5, insA‑5 | |
| JC JC | 2,011,097 | IS5 (+) +4 bp | intergenic (+18/+123) | yedL → / ← yedN | putative acetyltransferase YedL/putative type III secreted effector, N‑terminal fragment |
| RA | 2,173,363 | Δ2 bp | pseudogene (915‑916/1358 nt) | gatC ← | galactitol‑specific PTS enzyme IIC component |
| RA | 3,118,732 | C→A | A127A (GCG→GCT) | yghJ ← | putative lipoprotein YghJ |
| RA | 3,155,372 | G→T | L6L (CTG→CTT) | yqhD → | NADPH‑dependent aldehyde reductase YqhD |
| RA | 3,322,089 | C→A | noncoding (70/87 nt) | leuU ← | tRNA‑Leu |
| RA | 3,354,487 | C→T | intergenic (‑437/‑238) | yhcC ← / → gltB | radical SAM family oxidoreductase YhcC/glutamate synthase subunit GltB |
| RA | 3,560,455 | +G | pseudogene (151/758 nt) | glpR ← | DNA‑binding transcriptional repressor GlpR |
| RA | 3,601,778 | C→T | T103T (ACG→ACA) | ftsX ← | cell division protein FtsX |
| RA | 3,815,883 | +C | coding (667/687 nt) | rph ← | truncated RNase PH |
| RA | 4,149,734 | G→T | P178T (CCG→ACG) | eptC ← | phosphoethanolamine transferase EptC |
| RA | 4,222,730 | G→T | intergenic (‑243/+74) | arpA ← / ← iclR | regulator of acetyl CoA synthetase/DNA‑binding transcriptional repressor IclR |
| RA | 4,261,710 | C→A | S14R (AGC→AGA) | dusA → | tRNA‑dihydrouridine synthase A |
| RA | 4,296,381 | +GC | intergenic (+587/+55) | gltP → / ← yjcO | glutamate/aspartate : H(+) symporter GltP/Sel1 repeat‑containing protein YjcO |
| Unassigned missing coverage evidence | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | NC_000913 | 3102970 | 3104084 | 1115 | 36 [32] | [35] 38 | mutY | mutY |
| * | * | ÷ | NC_000913 | 3423770–3424233 | 3424526–3424239 | 7–757 | 39 [33] | [35] 40 | [rrfD]–[rrlD] | [rrfD],[rrlD] |
| Unassigned new junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NC_000913 | 1207790 = | 29 (0.220) | 149 (1.300) | 71/244 | 0.1 | 81.3% | coding (290/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | 1209619 = | 43 (0.370) | pseudogene (37/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1207805 | 29 (0.220) | 74 (0.640) | 49/244 | 0.7 | 68.3% | coding (305/630 nt) | ycfK | e14 prophage; protein StfP |
| ? | NC_000913 | = 1209602 | 43 (0.370) | pseudogene (54/537 nt) | stfE | e14 prophage; putative side tail fiber protein fragment | |||||
| * | ? | NC_000913 | = 1299498 | 0 (0.000) | 131 (1.040) | 75/268 | 0.1 | 100% | intergenic (+253/‑33) | ychE/insH21 | putative inner membrane protein/IS5 transposase and trans‑activator |
| ? | NC_000913 | 1300698 = | 0 (0.000) | intergenic (+151/‑484) | insH21/oppA | IS5 transposase and trans‑activator/oligopeptide ABC transporter periplasmic binding protein | |||||
| * | ? | NC_000913 | 3363001 = | 209 (1.610) | 185 (1.430) | 77/274 | 0.1 | 63.8% | coding (195/2382 nt) | yhcD | putative fimbrial usher protein YhcD |
| ? | NC_000913 | 3766087 = | 2 (0.020) | coding (3905/4134 nt) | rhsA | rhs element protein RhsA | |||||
| * | ? | NC_000913 | = 3653230 | NA (NA) | 128 (0.990) | 69/276 | 0.3 | 92.8% | noncoding (1/1195 nt) | IS5 | repeat region |
| ? | NC_000913 | = 3766089 | 10 (0.080) | coding (3907/4134 nt) | rhsA | rhs element protein RhsA | |||||