Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
1 1 1
2 1 1
3 1 1
4 1 1
5 1 1
6 1 1
7 1 1
8 1 1
9 1 1
10 1 1
11 1 1
12 1 1
13 1 1
14 1 1
15 1 1
16 1 1
17 1 1
18 1 1
19 1 1
20 1 1
21 1 1
22 1 1
23 1 1
24 1 1
25 1 1
26 1 1
27 1 1
28 1 1
29 1 1
30 1 1
31 1 1
32 1 1
33 1 1
34 1 1
35 1 1
36 1 1
37 1 1
38 1 1
39 1 1
40 1 1
41 1 1
42 1 1
43 1 1
44 1 1
45 1 1
45 45 45

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 202 415
Multiple Base Substitutions 3 3
Deletions 50 194
Insertions 13 145
Mobile Element Insertions 12 57
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 280 814

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A1 F60 I1 R1 19 0 43.5 1473330 98.8% 1455650 138.6
A2 F60 I1 R1 24 0 41.1 1397072 98.8% 1380307 138.4
A3 F60 I1 R1 18 0 43.3 1467046 98.8% 1449441 138.7
A4 F60 I1 R1 17 0 33.2 1123130 98.8% 1109652 138.8
A5 F60 I1 R1 25 0 51.1 1725140 98.8% 1704438 138.8
A6 F60 I1 R1 21 0 40.1 1360994 98.8% 1344662 139.1
A7 F60 I1 R1 26 0 145.4 4915572 98.9% 4861500 138.8
A8 F60 I1 R1 21 0 41.4 1402642 98.7% 1384407 138.0
A9 F60 I1 R1 15 0 71.5 2434152 98.6% 2400073 138.2
A10 F60 I1 R1 16 0 40.1 1364142 98.7% 1346408 138.3
A11 F60 I1 R1 22 0 49.8 1704528 98.6% 1680664 138.4
A12 F60 I1 R1 19 0 88.7 3019690 98.6% 2977414 138.3
A13 F60 I1 R1 16 0 98.2 3332656 98.6% 3285998 138.2
A14 F60 I1 R1 20 0 85.9 2954762 98.8% 2919304 138.5
A15 F60 I1 R1 16 0 51.6 1759406 98.6% 1734774 138.2
A16 F60 I1 R1 18 0 40.4 1393842 98.9% 1378509 138.1
A17 F60 I1 R1 17 0 25.6 870458 98.8% 860012 138.3
A18 F60 I1 R1 17 0 53.0 1785734 98.9% 1766090 139.5
A19 F60 I1 R1 24 0 40.0 1367016 98.7% 1349244 138.6
A20 F60 I1 R1 17 0 35.9 1226658 98.8% 1211938 139.3
A21 F60 I1 R1 12 0 57.0 1949064 98.8% 1925675 138.5
A22 F60 I1 R1 18 0 54.7 1860826 98.9% 1840356 138.1
A23 F60 I1 R1 17 0 145.5 4959514 98.5% 4885121 138.1
A24 F60 I1 R1 14 0 76.3 2604456 98.8% 2573202 138.4
A25 F60 I1 R1 14 0 108.0 3679756 98.7% 3631919 138.3
A26 F60 I1 R1 17 0 54.2 1827820 99.0% 1809541 139.6
A27 F60 I1 R1 15 0 49.5 1681690 98.8% 1661509 139.4
A28 F60 I1 R1 17 0 39.6 1345070 98.9% 1330274 138.9
A29 F60 I1 R1 12 0 175.7 6010118 98.8% 5937996 138.9
A30 F60 I1 R1 15 0 91.2 3103664 98.7% 3063316 137.9
A31 F60 I1 R1 19 0 77.8 2638074 98.7% 2603779 138.1
A32 F60 I1 R1 15 0 86.8 2967214 99.0% 2937541 138.1
A33 F60 I1 R1 17 0 65.5 2241852 98.8% 2214949 138.3
A34 F60 I1 R1 14 0 117.0 3967004 98.6% 3911465 138.1
A35 F60 I1 R1 21 0 103.5 3513884 98.6% 3464689 138.5
A36 F60 I1 R1 13 0 103.9 3554956 98.7% 3508741 138.6
A37 F60 I1 R1 21 0 79.1 2697330 98.7% 2662264 138.3
A38 F60 I1 R1 20 0 100.0 3384686 98.8% 3344069 138.1
A39 F60 I1 R1 17 0 70.9 2401242 98.9% 2374828 138.4
A40 F60 I1 R1 23 0 105.9 3634506 98.9% 3594526 138.7
A41 F60 I1 R1 22 0 84.3 2906400 98.8% 2871523 138.6
A42 F60 I1 R1 20 0 78.9 2679734 98.6% 2642217 138.6
A43 F60 I1 R1 18 0 110.5 3780228 98.7% 3731085 138.4
A44 F60 I1 R1 17 0 93.7 3192976 98.9% 3157853 138.3
A45 F60 I1 R1 18 0 98.3 3347606 98.6% 3300739 138.0

Mutation Needle Plot

Mutation Targets

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