Notes

Publication: None

ALE, flask, and isolate counts

ALE replicate Flask count Isolate count
9 4 5
10 4 5
11 4 5
12 4 5
4 16 20

ALE experiment mutation counts

Mutation Type Unique Observed
Single Base Substitutions 215 393
Multiple Base Substitutions 1 18
Deletions 14 36
Insertions 17 29
Mobile Element Insertions 0 0
Amplifications 0 0
Gene Conversions 0 0
Inversions 0 0
Total 247 476

Sample Resequencing Stats

Note: The mutation counts shown below represent unfiltered mutation sets.
ALE, Flask, Isolate Predicted Mutations Unassigned Missing Coverage Evidence Mean Coverage Total Reads Percent Mapped Mapped Reads Average Read Length
A9 F17 I1 R1 9 0 38.2 1833626 94.6% 1734610 135.7
A9 F35 I1 R1 9 0 33.7 1605458 94.7% 1520368 136.7
A9 F43 I1 R1 6 0 50.5 2463686 94.5% 2328183 134.3
A9 F60 I0 R1 1078 0 79.7 3885236 94.2% 3659892 134.7
A9 F60 I1 R1 7 0 157.9 7688958 95.1% 7312199 133.6
A10 F16 I1 R1 8 0 104.7 5022446 95.2% 4781368 135.4
A10 F32 I1 R1 7 0 73.8 3523680 95.1% 3351019 135.9
A10 F42 I1 R1 7 0 56.1 2676364 95.0% 2542545 135.9
A10 F54 I0 R1 1784 0 57.4 2855260 92.9% 2652536 134.0
A10 F54 I1 R1 6 0 159.9 7861600 93.2% 7327011 135.0
A11 F12 I1 R1 8 0 47.5 2293000 93.0% 2132490 137.7
A11 F26 I1 R1 4 0 31.4 1436796 93.6% 1344841 143.6
A11 F36 I1 R1 4 0 42.2 2107438 92.8% 1955702 134.2
A11 F50 I0 R1 804 0 34.5 1706502 92.5% 1578514 135.5
A11 F50 I5 R1 9 0 146.6 7265014 92.9% 6749198 134.3
A12 F17 I1 R1 5 0 61.2 3000388 92.9% 2787360 136.0
A12 F34 I1 R1 7 0 77.4 3839086 93.1% 3574189 134.0
A12 F41 I1 R1 7 0 51.2 2540408 92.9% 2360039 134.3
A12 F55 I0 R1 2523 0 96.7 4820918 92.8% 4473811 133.7
A12 F55 I5 R1 8 0 45.3 2287170 92.9% 2124780 132.8

Mutation Needle Plot

Mutation Targets

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