mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 41 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | JE3692‑4 | 1,327,121 | 0 | C | T | 56.8% | 26.6 / 213.7 | 152 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | JE3692‑4 | 699,722 | 0 | A | G | 54.9% | ‑4.5 / 137.1 | 91 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | JE3692‑4 | 1,927,183 | 0 | A | C | 50.0% | 28.2 / 11.3 | 45 | intergenic (+26/+35) | PP_1720/PP_1721 | Alcohol dehydrogenase, zinc‑containing/putative phosphoserine phosphatase |
| * | JE3692‑4 | 4,360,849 | 0 | A | G | 45.9% | 62.5 / 184.3 | 122 | intergenic (‑70/+404) | PP_3820/PP_3821 | Group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | JE3692‑4 | 195,634 | 0 | C | T | 38.1% | 222.2 / 195.9 | 160 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | JE3692‑4 | 1,927,172 | 0 | T | C | 35.7% | 75.1 / 24.8 | 56 | intergenic (+15/+46) | PP_1720/PP_1721 | Alcohol dehydrogenase, zinc‑containing/putative phosphoserine phosphatase |
| * | JE3692‑4 | 2,184,200 | 0 | G | A | 34.7% | 117.1 / 30.2 | 77 | T268T (ACG→ACA) | PP_1931 | conserved protein of unknown function |
| * | JE3692‑4 | 196,351 | 0 | C | G | 34.5% | 289.5 / 234.1 | 194 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| * | JE3692‑4 | 2,184,203 | 0 | T | C | 32.5% | 118.0 / 46.2 | 80 | N269N (AAT→AAC) | PP_1931 | conserved protein of unknown function |
| * | JE3692‑4 | 5,999,965 | 0 | C | A | 31.7% | 220.6 / 99.0 | 104 | intergenic (+183/‑363) | PP_5246/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | JE3692‑4 | 5,999,970 | 0 | C | T | 30.5% | 229.9 / 108.0 | 118 | intergenic (+188/‑358) | PP_5246/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | JE3692‑4 | 5,999,971 | 0 | A | G | 30.5% | 242.8 / 109.0 | 118 | intergenic (+189/‑357) | PP_5246/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | JE3692‑4 | 4,350,637 | 0 | A | G | 30.0% | 69.8 / 14.4 | 40 | intergenic (+113/+29) | PP_3812/PP_5632 | putative Lipase/enzyme subunit involved in allo‑isoleucine metabolism |
| * | JE3692‑4 | 5,999,981 | 0 | T | C | 30.0% | 247.2 / 96.8 | 120 | intergenic (+199/‑347) | PP_5246/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | JE3692‑4 | 5,999,987 | 0 | A | . | 29.0% | 350.3 / 154.2 | 124 | intergenic (+205/‑341) | PP_5246/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA |
| * | JE3692‑4 | 5,615,093 | 0 | C | G | 28.6% | 197.7 / 37.2 | 99 | G91R (GGT→CGT) | PP_4925 | conserved protein of unknown function |
| * | JE3692‑4 | 196,327 | 0 | A | C | 28.1% | 325.1 / 173.1 | 185 | T611T (ACA→ACC) | PP_0168 | putative surface adhesion protein |
| * | JE3692‑4 | 2,962,717 | 0 | C | G | 28.1% | 120.3 / 26.4 | 60 | intergenic (+40/‑156) | PP_2588/PP_2589 | Aminotransferase, class III/Aldehyde dehydrogenase family protein |
| * | JE3692‑4 | 196,390 | 0 | T | C | 27.3% | 280.8 / 105.0 | 139 | D632D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | JE3692‑4 | 5,301,739 | 0 | G | C | 27.3% | 126.9 / 24.6 | 56 | A244G (GCC→GGC) | PP_4663 | conserved transmembrane protein of unknown function |
| Marginal new junction evidence (lowest skew 10 of 861 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | JE3692‑4 | 174577 = | NA (NA) | 19 (0.200) | 15/186 | 7.3 | NA | noncoding (1375/2902 nt) | PP_23SA | 23S ribosomal RNA |
| ? | JE3692‑4 | 174595 = | NA (NA) | noncoding (1393/2902 nt) | PP_23SA | 23S ribosomal RNA | |||||
| * | ? | JE3692‑4 | 173166 = | NA (NA) | 16 (0.160) | 14/194 | 8.0 | NA | intergenic (+256/‑37) | PP_16SA/PP_23SA | 16S ribosomal RNA/23S ribosomal RNA |
| ? | JE3692‑4 | 173218 = | NA (NA) | noncoding (16/2902 nt) | PP_23SA | 23S ribosomal RNA | |||||
| * | ? | JE3692‑4 | = 611136 | NA (NA) | 15 (0.160) | 13/190 | 8.3 | NA | noncoding (237/1314 nt) | mobile_element | repeat region |
| ? | JE3692‑4 | = 611169 | NA (NA) | noncoding (270/1314 nt) | mobile_element | repeat region | |||||
| * | ? | JE3692‑4 | = 172591 | NA (NA) | 13 (0.130) | 12/190 | 8.7 | NA | noncoding (1203/1522 nt) | PP_16SA | 16S ribosomal RNA |
| ? | JE3692‑4 | = 172625 | NA (NA) | noncoding (1237/1522 nt) | PP_16SA | 16S ribosomal RNA | |||||
| * | ? | JE3692‑4 | 175249 = | NA (NA) | 15 (0.160) | 11/188 | 9.0 | NA | noncoding (2047/2902 nt) | PP_23SA | 23S ribosomal RNA |
| ? | JE3692‑4 | 175291 = | NA (NA) | noncoding (2089/2902 nt) | PP_23SA | 23S ribosomal RNA | |||||
| * | ? | JE3692‑4 | = 699026 | NA (NA) | 12 (0.120) | 11/190 | 9.1 | NA | noncoding (1203/1522 nt) | PP_16SD | 16S ribosomal RNA |
| ? | JE3692‑4 | = 699060 | NA (NA) | noncoding (1237/1522 nt) | PP_16SD | 16S ribosomal RNA | |||||
| * | ? | JE3692‑4 | = 2556265 | NA (NA) | 13 (0.140) | 10/184 | 9.3 | NA | intergenic (+160/‑84) | PP_t36/PP_23SF | tRNA‑Ala/23S ribosomal RNA |
| ? | JE3692‑4 | = 2556295 | NA (NA) | intergenic (+190/‑54) | PP_t36/PP_23SF | tRNA‑Ala/23S ribosomal RNA | |||||
| * | ? | JE3692‑4 | = 173119 | NA (NA) | 13 (0.140) | 10/184 | 9.3 | NA | intergenic (+209/‑84) | PP_16SA/PP_23SA | 16S ribosomal RNA/23S ribosomal RNA |
| ? | JE3692‑4 | = 173149 | NA (NA) | intergenic (+239/‑54) | PP_16SA/PP_23SA | 16S ribosomal RNA/23S ribosomal RNA | |||||
| * | ? | JE3692‑4 | 2092555 = | NA (NA) | 11 (0.120) | 10/186 | 9.4 | NA | noncoding (1160/1445 nt) | mobile_element | repeat region |
| ? | JE3692‑4 | 2092580 = | NA (NA) | noncoding (1185/1445 nt) | mobile_element | repeat region | |||||
| * | ? | JE3692‑4 | = 611115 | NA (NA) | 10 (0.110) | 10/186 | 9.4 | NA | noncoding (216/1314 nt) | mobile_element | repeat region |
| ? | JE3692‑4 | = 611138 | NA (NA) | noncoding (239/1314 nt) | mobile_element | repeat region | |||||