mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 40 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | JE3692‑4 | 1,327,121 | 0 | C | T | 47.4% | 53.2 / 121.1 | 76 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | JE3692‑4 | 2,184,200 | 0 | G | A | 43.9% | 59.4 / 31.5 | 67 | T268T (ACG→ACA) | PP_1931 | conserved protein of unknown function |
| * | JE3692‑4 | 699,722 | 0 | A | G | 43.6% | 22.9 / 53.1 | 39 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | JE3692‑4 | 2,184,203 | 0 | T | C | 43.5% | 53.2 / 58.4 | 69 | N269N (AAT→AAC) | PP_1931 | conserved protein of unknown function |
| * | JE3692‑4 | 3,636,954 | 0 | G | C | 41.0% | 26.9 / 29.4 | 41 | G226G (GGC→GGG) | PP_3195 | conserved protein of unknown function |
| * | JE3692‑4 | 1,927,172 | 0 | T | C | 39.5% | 46.6 / 20.6 | 43 | intergenic (+15/+46) | PP_1720/PP_1721 | Alcohol dehydrogenase, zinc‑containing/putative phosphoserine phosphatase |
| * | JE3692‑4 | 4,360,849 | 0 | A | G | 38.5% | 112.4 / 133.3 | 109 | intergenic (‑70/+404) | PP_3820/PP_3821 | Group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | JE3692‑4 | 195,634 | 0 | C | T | 34.2% | 185.4 / 115.5 | 114 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | JE3692‑4 | 2,184,204 | 0 | G | C | 34.0% | 88.9 / 30.3 | 69 | V270L (GTC→CTC) | PP_1931 | conserved protein of unknown function |
| * | JE3692‑4 | 196,351 | 0 | C | G | 33.7% | 228.0 / 209.3 | 173 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| * | JE3692‑4 | 196,390 | 0 | T | C | 32.7% | 173.9 / 107.1 | 114 | D632D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | JE3692‑4 | 3,636,947 | 0 | G | C | 30.0% | 64.3 / 14.9 | 43 | L229V (CTT→GTT) | PP_3195 | conserved protein of unknown function |
| * | JE3692‑4 | 6,053,162 | 0 | C | G | 30.0% | 116.1 / 31.3 | 61 | G265G (GGC→GGG) | PP_5295 | conserved protein of unknown function |
| * | JE3692‑4 | 970,670 | 0 | T | C | 28.3% | 116.0 / 11.3 | 53 | H173H (CAT→CAC) | PP_0833 | queuine tRNA‑ribosyltransferase |
| * | JE3692‑4 | 363,987 | 0 | C | G | 27.8% | 74.4 / 13.7 | 36 | G183R (GGC→CGC) | PP_0303 | dehydrocarnitine cleavage enzyme |
| * | JE3692‑4 | 2,083,944 | 0 | G | C | 27.5% | 90.2 / 13.8 | 44 | intergenic (+97/+18) | PP_1853/PP_1854 | Transcriptional regulator, LysR family/conserved protein of unknown function |
| * | JE3692‑4 | 1,541,581 | 0 | C | T | 27.4% | 134.1 / 28.0 | 74 | intergenic (‑57/‑44) | PP_1351/PP_1352 | putative 2‑dehydropantoate 2‑reductase/UPF0234 protein PP_1352 |
| * | JE3692‑4 | 5,687,669 | 0 | G | C | 27.1% | 102.6 / 20.4 | 51 | A471G (GCG→GGG) | PP_4983 | putative amine oxidase |
| * | JE3692‑4 | 3,636,949 | 0 | G | C | 26.3% | 67.9 / 11.5 | 43 | A228G (GCG→GGG) | PP_3195 | conserved protein of unknown function |
| * | JE3692‑4 | 5,301,739 | 0 | G | C | 26.0% | 117.1 / 24.3 | 51 | A244G (GCC→GGC) | PP_4663 | conserved transmembrane protein of unknown function |
| Marginal new junction evidence (lowest skew 10 of 174 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | JE3692‑4 | = 5566684 | 1 (0.010) | 37 (0.500) +GCC |
25/192 | 3.0 | 97.5% | intergenic (‑84/+87) | PP_4887/PP_4888 | conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer |
| ? | JE3692‑4 | 5566685 = | 1 (0.010) | intergenic (‑85/+86) | PP_4887/PP_4888 | conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer | |||||
| * | ? | JE3692‑4 | = 652783 | 68 (0.890) | 17 (0.350) | 8/128 | 5.5 | 43.6% | coding (1960/1962 nt) | PP_0562 | Methyl‑accepting chemotaxis protein CtpL |
| ? | JE3692‑4 | 4820353 = | 0 (0.000) | intergenic (‑318/‑237) | PP_4234/PP_4235 | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | JE3692‑4 | = 4086430 | NA (NA) | 10 (0.180) +27 bp |
8/144 | 6.3 | 11.6% | noncoding (610/2058 nt) | mobile_element | repeat region |
| ? | JE3692‑4 | = 4314512 | 105 (1.380) | intergenic (+858/‑442) | PP_3774/PP_5627 | conserved protein of unknown function/protein of unknown function | |||||
| * | ? | JE3692‑4 | 4820318 = | 1 (0.010) | 18 (0.320) | 8/146 | 6.4 | 50.9% | intergenic (‑283/‑272) | PP_4234/PP_4235 | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | JE3692‑4 | 5999855 = | 34 (0.610) | intergenic (+73/‑473) | PP_5246/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | JE3692‑4 | = 4086430 | NA (NA) | 15 (0.260) +23 bp |
8/152 | 6.7 | 20.7% | noncoding (610/2058 nt) | mobile_element | repeat region |
| ? | JE3692‑4 | = 5556444 | 75 (0.980) | intergenic (‑508/+369) | PP_4877/PP_4879 | 30S ribosomal protein S6/23S rRNA (guanosine‑2'‑O‑)‑methyltransferase RlmB | |||||
| * | ? | JE3692‑4 | = 4086430 | NA (NA) | 15 (0.260) +23 bp |
8/152 | 6.7 | 42.9% | noncoding (610/2058 nt) | mobile_element | repeat region |
| ? | JE3692‑4 | = 5234773 | 26 (0.340) | noncoding (67/2051 nt) | mobile_element | repeat region | |||||
| * | ? | JE3692‑4 | = 4085891 | 22 (0.290) | 14 (0.240) +23 bp |
8/152 | 6.7 | 45.3% | noncoding (71/2058 nt) | mobile_element | repeat region |
| ? | JE3692‑4 | = 4086430 | NA (NA) | noncoding (610/2058 nt) | mobile_element | repeat region | |||||
| * | ? | JE3692‑4 | = 3838453 | 25 (0.330) | 14 (0.240) +23 bp |
8/152 | 6.7 | 42.2% | noncoding (62/2042 nt) | mobile_element | repeat region |
| ? | JE3692‑4 | = 3838992 | NA (NA) | noncoding (601/2042 nt) | mobile_element | repeat region | |||||
| * | ? | JE3692‑4 | 2931359 = | 28 (0.370) | 14 (0.240) +23 bp |
8/152 | 6.7 | 39.4% | intergenic (‑475/+90) | PP_2563/PP_2564 | putative Antibiotic biosynthesis protein/putative Quercetin 2,3‑dioxygenase |
| ? | JE3692‑4 | = 2943558 | NA (NA) | noncoding (221/1674 nt) | mobile_element | repeat region | |||||
| * | ? | JE3692‑4 | 1441995 = | 22 (0.290) | 14 (0.240) +23 bp |
8/152 | 6.7 | 45.3% | noncoding (1996/2040 nt) | mobile_element | repeat region |
| ? | JE3692‑4 | = 2943558 | NA (NA) | noncoding (221/1674 nt) | mobile_element | repeat region | |||||