mutation predictions | marginal predictions | summary statistics | genome diff | command line log
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breseq version 0.35.4 revision f352f80f4bc9
mutation predictions | marginal predictions | summary statistics | genome diff | command line log |
| Marginal read alignment evidence (highest frequency 20 of 66 shown, sorted by frequency from high to low) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | JE3692‑4 | 699,722 | 0 | A | G | 52.4% | 2.2 / 132.5 | 82 | intergenic (+115/‑129) | PP_t06/PP_23SD | tRNA‑Ala/23S ribosomal RNA |
| * | JE3692‑4 | 1,327,121 | 0 | C | T | 50.0% | 43.8 / 143.7 | 82 | intergenic (+97/‑196) | PP_16SE/PP_23SE | 16S ribosomal RNA/23S ribosomal RNA |
| * | JE3692‑4 | 4,360,849 | 0 | A | G | 48.8% | 44.7 / 214.8 | 129 | intergenic (‑70/+404) | PP_3820/PP_3821 | Group II intron‑encoding maturase/UTP‑glucose‑1‑phosphate uridylyltransferase |
| * | JE3692‑4 | 195,634 | 0 | C | T | 44.7% | 170.4 / 218.9 | 152 | T380T (ACC→ACT) | PP_0168 | putative surface adhesion protein |
| * | JE3692‑4 | 2,184,203 | 0 | T | C | 41.5% | 75.6 / 70.7 | 82 | N269N (AAT→AAC) | PP_1931 | conserved protein of unknown function |
| * | JE3692‑4 | 4,350,636 | 0 | T | G | 39.6% | 53.6 / 13.1 | 54 | intergenic (+112/+30) | PP_3812/PP_5632 | putative Lipase/enzyme subunit involved in allo‑isoleucine metabolism |
| * | JE3692‑4 | 196,351 | 0 | C | G | 36.9% | 234.2 / 277.0 | 195 | T619T (ACC→ACG) | PP_0168 | putative surface adhesion protein |
| * | JE3692‑4 | 1,927,172 | 0 | T | C | 34.0% | 86.2 / 19.8 | 53 | intergenic (+15/+46) | PP_1720/PP_1721 | Alcohol dehydrogenase, zinc‑containing/putative phosphoserine phosphatase |
| * | JE3692‑4 | 2,184,200 | 0 | G | A | 33.3% | 127.0 / 30.7 | 83 | T268T (ACG→ACA) | PP_1931 | conserved protein of unknown function |
| * | JE3692‑4 | 196,327 | 0 | A | C | 33.0% | 267.1 / 220.8 | 188 | T611T (ACA→ACC) | PP_0168 | putative surface adhesion protein |
| * | JE3692‑4 | 1,904,632 | 0 | A | C | 32.2% | 168.6 / 34.5 | 90 | intergenic (+70/‑450) | PP_t18/PP_1703 | tRNA‑Asp/assimilatory nitrate reductase/sulfite reductase |
| * | JE3692‑4 | 3,636,954 | 0 | G | C | 32.0% | 65.8 / 28.5 | 52 | G226G (GGC→GGG) | PP_3195 | conserved protein of unknown function |
| * | JE3692‑4 | 363,987 | 0 | C | G | 31.8% | 112.5 / 35.4 | 68 | G183R (GGC→CGC) | PP_0303 | dehydrocarnitine cleavage enzyme |
| * | JE3692‑4 | 5,995,528 | 0 | A | G | 31.1% | 89.9 / 16.0 | 46 | intergenic (+48/+41) | PP_5242/PP_5243 | Sensor histidine kinase/GAF domain protein/putative hydrolase |
| * | JE3692‑4 | 1,102,681 | 0 | G | C | 30.8% | 103.3 / 27.1 | 56 | E41D (GAG→GAC) | PP_0962 | toluene‑tolerance protein |
| * | JE3692‑4 | 2,184,204 | 0 | G | C | 30.6% | 151.4 / 37.8 | 82 | V270L (GTC→CTC) | PP_1931 | conserved protein of unknown function |
| * | JE3692‑4 | 863,383 | 0 | G | C | 30.2% | 127.5 / 34.6 | 68 | A173P (GCC→CCC) | PP_0744 | Ferrochelatase |
| * | JE3692‑4 | 196,390 | 0 | T | C | 29.8% | 285.3 / 141.8 | 161 | D632D (GAT→GAC) | PP_0168 | putative surface adhesion protein |
| * | JE3692‑4 | 5,735,358 | 0 | A | C | 29.3% | 125.7 / 18.1 | 58 | intergenic (‑184/+110) | PP_5024/PP_5025 | Amino acid ABC transporter, periplasmic amino acid‑binding protein/Glucans biosynthesis glucosyltransferase H |
| * | JE3692‑4 | 4,182,318 | 0 | T | C | 28.8% | 126.9 / 12.5 | 59 | intergenic (‑282/‑105) | PP_3668/PP_3669 | Catalase‑peroxidase/Transcriptional regulator, LysR family |
| Marginal new junction evidence (lowest skew 10 of 248 shown) | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | JE3692‑4 | = 5566684 | 0 (0.000) | 34 (0.360) +GCC |
30/192 | 4.1 | 100% | intergenic (‑84/+87) | PP_4887/PP_4888 | conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer |
| ? | JE3692‑4 | 5566685 = | 0 (0.000) | intergenic (‑85/+86) | PP_4887/PP_4888 | conserved protein of unknown function/putative methyl‑accepting chemotaxis transducer | |||||
| * | ? | JE3692‑4 | = 652783 | 90 (0.920) | 18 (0.290) | 15/128 | 5.0 | 38.4% | coding (1960/1962 nt) | PP_0562 | Methyl‑accepting chemotaxis protein CtpL |
| ? | JE3692‑4 | 4820353 = | 0 (0.000) | intergenic (‑318/‑237) | PP_4234/PP_4235 | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | JE3692‑4 | 4820318 = | 0 (0.000) | 18 (0.250) | 15/146 | 6.1 | 50.0% | intergenic (‑283/‑272) | PP_4234/PP_4235 | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | JE3692‑4 | 5999855 = | 36 (0.500) | intergenic (+73/‑473) | PP_5246/PP_mr64 | glutathione‑regulated potassium/H+ antiporter/C4 ncRNA | |||||
| * | ? | JE3692‑4 | = 4820318 | 5 (0.050) | 10 (0.110) | 10/182 | 10.3 | 49.3% | intergenic (‑283/‑272) | PP_4234/PP_4235 | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | JE3692‑4 | 4820333 = | 16 (0.180) | intergenic (‑298/‑257) | PP_4234/PP_4235 | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | JE3692‑4 | = 3395709 | 78 (0.800) | 11 (0.110) | 8/194 | 12.1 | 11.3% | coding (501/546 nt) | PP_2985 | conserved protein of unknown function |
| ? | JE3692‑4 | = 4791212 | 96 (1.000) | coding (199/10413 nt) | PP_4219 | non‑ribosomal peptide synthetase | |||||
| * | ? | JE3692‑4 | = 4820320 | 12 (0.120) | 8 (0.090) | 6/182 | 12.7 | 17.0% | intergenic (‑285/‑270) | PP_4234/PP_4235 | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 |
| ? | JE3692‑4 | 4820424 = | 67 (0.750) | intergenic (‑389/‑166) | PP_4234/PP_4235 | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | JE3692‑4 | 1070247 = | 68 (0.690) | 13 (0.130) | 7/196 | 12.8 | 20.0% | intergenic (+47/+95) | PP_0927/PP_0928 | aromatic amino acid transport protein/K+‑dependent Na+/Ca+ exchanger related‑protein |
| ? | JE3692‑4 | = 4820273 | 37 (0.380) | intergenic (‑238/‑317) | PP_4234/PP_4235 | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| * | ? | JE3692‑4 | 3590694 = | 90 (0.920) | 9 (0.100) | 6/186 | 13.0 | 9.7% | intergenic (+227/‑97) | PP_3158/PP_5589 | conserved exported protein of unknown function/protein of unknown function containing Rhs repeat‑associated core domain |
| ? | JE3692‑4 | 3590721 = | 83 (0.900) | intergenic (+254/‑70) | PP_3158/PP_5589 | conserved exported protein of unknown function/protein of unknown function containing Rhs repeat‑associated core domain | |||||
| * | ? | JE3692‑4 | = 2567246 | 98 (1.000) | 6 (0.070) | 6/186 | 13.0 | 6.0% | coding (535/594 nt) | PP_2245 | Transcriptional regulator, Cro/CI family |
| ? | JE3692‑4 | = 2567265 | 96 (1.040) | coding (516/594 nt) | PP_2245 | Transcriptional regulator, Cro/CI family | |||||
| * | ? | JE3692‑4 | = 173119 | NA (NA) | 7 (0.080) | 6/186 | 13.0 | NA | intergenic (+209/‑84) | PP_16SA/PP_23SA | 16S ribosomal RNA/23S ribosomal RNA |
| ? | JE3692‑4 | = 173149 | NA (NA) | intergenic (+239/‑54) | PP_16SA/PP_23SA | 16S ribosomal RNA/23S ribosomal RNA | |||||