| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AE015451 | 1683236 = | 206 (0.960) | 18 (0.100) | 9/208 | 18.4 | 15.3% | intergenic (+45/‑186) | recJ/PP_1478 | ssDNA‑specific exonuclease RecJ/putative Xenobiotic reductase |
| ? | AE015451 | = 4808162 | 22 (0.120) | intergenic (‑271/‑284) | PP_4234/dsbD‑II | Aldehyde oxidase and xanthine dehydrogenase/thiol/disulfide interchange protein 2 | |||||
| Rejected: Coverage evenness skew score above cutoff. | |||||||||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
CAAGTGCACATCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1683376‑1683236‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgggcggcgctcgatCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCC < AE015451/4808162‑4808041 CAAGTGCACATCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGC < 1:1549420/125‑1 AAGTGCACATCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCG > 1:1549146/1‑125 AAGTGCACATCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCG < 1:1549446/125‑1 AGTGCACATCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGC < 2:1549407/125‑1 GTGCACATCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCG > 1:1549143/1‑125 GTGCACATCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCG > 1:1549144/1‑125 GTGCACATCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCG > 1:1549145/1‑125 TGCACATCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGG > 1:1549142/1‑125 GCACATCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGG < 2:1549418/125‑1 CACATCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGG < 1:1549300/124‑1 CACATCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGG < 1:1549564/124‑1 CACATCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGG > 2:1549141/1‑124 CATCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCGG < 1:1549332/125‑1 CATCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCGG < 1:1549357/125‑1 TCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCG > 1:1549140/1‑125 TCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGT‑GGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCG < 2:1549447/124‑1 CCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGC < 1:1549374/125‑1 CCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCT < 1:1549325/125‑1 CCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCT < 1:1549261/125‑1 CCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCT < 2:1549388/125‑1 CCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCG < 2:1549680/120‑1 CCTGGCCCGGTGCCAGTTATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGTGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCGG < 2:1549183/121‑1 GGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCG < 1:1549315/124‑1 GCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCG < 2:1549575/116‑1 GGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGA > 2:1549139/1‑78 GCGCGTGTGAGAGCGAGCGCCGCGCGGGCGGCGCTCGCTCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGC < 2:4083328/114‑1 GCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCC > 1:4083275/1‑125 GCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCC < 2:4083293/124‑1 AGATCGAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGC > 2:4083272/1‑119 gcgaAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACC > 1:4083266/5‑125 cgaAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACAC > 1:4083267/4‑123 TCGAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACA < 2:4083294/122‑1 gaAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTA > 1:4083261/3‑125 gaAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCT > 2:4083263/3‑124 gaAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCCGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTA > 2:4083262/3‑125 aagaGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTAC > 2:4083259/5‑125 aAGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTAC > 2:4083260/2‑125 AGCGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACC > 1:4083257/1‑125 ggGCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTAAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCAAACCACCTACCC > 1:4083255/3‑125 GCCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGC > 2:4083281/1‑96 CCGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCC > 1:4083253/1‑125 CGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCA > 1:4083248/1‑125 CGCGCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCA > 1:4083249/1‑125 GCGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAA > 1:4083246/1‑123 CGGGCGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCT > 2:4083264/1‑113 CGGCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGC < 1:4083344/115‑1 GCGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAACGCGCGAAT > 2:4083243/1‑125 CGCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAAT > 1:4083242/1‑124 GCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTC > 1:4083241/1‑125 GCTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCG > 1:4083244/1‑118 CTCGATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTC < 1:4083364/124‑1 GATCTCCCAGGCGGTGAAACTCTCCCGGCGCACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTAGCCGCCAA > 2:4083247/1‑110 GATCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGACAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCC > 2:4083239/1‑125 CAAGTGCACATCCCTGGCCCGGTGCCGGTCATTAATGAGACTAGACCAGATTGGTGGGGGGAGGTTCTGTGGGATGGCGAGGGGTTCGCCGAAAGGTTTGCAGCGCCTGTGAGATCGAGCGCCGCGCGGGCGGCGCTCGAT‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑ < AE015451/1683376‑1683236‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑cgcgggcggcgctcgatCTCCCAGGCGCTGAAACTCTCCCGGCGAACACCTCCCAGGCGCTGAAAATCCCCCGGCGAACACCTCCCAGGCGCTGAAAACCTCCCGCCAAACACCTACCCGCCAAAGCGCGAATTCCGCC < AE015451/4808162‑4808041 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 14 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |