New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	AE015451	3049681 =	5 (0.020)	55 (0.260)	34/242	10.8	37.3%	coding (841/1188 nt)	PP_2662	conserved exported protein of unknown function
	?	AE015451	3366553 =	180 (0.840)					intergenic (+219/‑142)	PP_2962/PP_2964	Alcohol dehydrogenase, zinc‑containing/putative transposase
Rejected: Coverage evenness skew score above cutoff.

GCCGAACTTGTACGAGCCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3049803‑3049681 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGC  >  AE015451/3366553‑3366676                                                                                                                                                                                                                                                         GCCGAACTTGTACGAGCCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGG                                                                                                                            <  2:2635173/125‑1  CCGAACTTGTACGAGCCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGG                                                                                                                           <  1:2635180/125‑1    GAACTTGTACGAGCCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGT                                                                                                                         <  2:2635149/125‑1     AACTTGTACGAGCCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTT                                                                                                                        <  1:2635145/125‑1     AACTTGTACGAGCCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTT                                                                                                                        <  1:2635157/125‑1         TGTACGAGCCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGC                                                                                                                    <  1:2635148/125‑1         TGTACGAGCCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGC                                                                                                                    <  1:2635154/125‑1          GTACGAGCCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGC                                                                                                                    <  2:2635291/124‑1             CGAGCCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAG                                                                                                                <  2:2635146/125‑1             CGAGCCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCG                                                                                                                  <  1:2635364/123‑1              GAGCCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGA                                                                                                               <  2:2635152/125‑1              GAGCCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGA                                                                                                               <  1:2635167/125‑1              GAGCCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGA                                                                                                               <  1:2635171/125‑1                GCCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGATA                                                                                                             <  1:2635138/125‑1                 CCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAA                                                                                                            <  1:2635355/125‑1                 CCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAA                                                                                                            <  2:2635177/125‑1                 CCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAA                                                                                                            <  2:2635160/125‑1                  CCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAAG                                                                                                           <  1:2635168/125‑1                  CCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGAT                                                                                                              <  2:2635193/122‑1                   CTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAAGG                                                                                                          <  2:2635141/125‑1                   CTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAG                                                                                                                <  1:2635143/119‑1                    TGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAAGGC                                                                                                         <  1:2635142/125‑1                    TGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTT                                                                                                                        <  2:2635233/110‑1                     GCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAAGGCA                                                                                                        <  1:2635178/125‑1                     GCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAAGGC                                                                                                         <  2:2635297/124‑1                      CAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGTGGTTATGCCGAGATAAGGCAA                                                                                                       <  2:2635215/125‑1                         CAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAA                                                                                                    <  1:2635166/125‑1                                               TTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAAT                                                                                                   <  2:2635203/104‑1                                                      AAACCGGTTCGCCGGCATTGTTTGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAGGGTGTTATGCCGAGATAAGGCAAAAA                                                                                                    <  2:2635225/96‑1                                                                                                 TTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACC                            >  2:2877190/1‑125                                                                                                 TTTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCG                                                                                        <  2:2635228/65‑1                                                                                                  TTGGCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCG                           >  1:2876864/1‑125                                                                                                     GCCTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTC                         >  2:2877041/1‑124                                                                                                       CTGGAACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTTGAGAGGCCGTGGCTTGCTGGTGATCCACCGTC                         >  1:2877027/1‑122                                                                                                            ACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGC                 >  2:2876805/1‑125                                                                                                            ACCCCGAGCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGC                 >  1:2876808/1‑125                                                                                                             CCCCGAGCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCC                >  2:2876926/1‑125                                                                                                             CCCCGAGCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTA                   >  1:2877064/1‑122                                                                                                              CCCGAGCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCC                >  2:2876825/1‑124                                                                                                                 GAGCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCT            >  1:2876850/1‑125                                                                                                                 GAGCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCT            >  1:2877399/1‑125                                                                                                                  AGCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTA           >  2:2877249/1‑125                                                                                                                   GCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTAT          >  1:2876752/1‑125                                                                                                                   GCCGGTCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTAT          >  2:2876821/1‑125                                                                                                                       GTCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCT       >  2:2877411/1‑124                                                                                                                        TCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTG      >  2:2876757/1‑124                                                                                                                        TCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTG      >  2:2876834/1‑124                                                                                                                        TCAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTG      >  2:2876848/1‑124                                                                                                                         CAGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGAT    >  1:2877144/1‑125                                                                                                                          AGGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTG      >  1:2877269/1‑122                                                                                                                           GGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGC  >  1:2876831/1‑125                                                                                                                           GGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATG   >  1:2877024/1‑124                                                                                                                           GGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATG   >  2:2876708/1‑124                                                                                                                           GGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATG   >  2:2876983/1‑124                                                                                                                           GGGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTAT          >  1:2876967/1‑117                                                                                                                                                                                                                                                         GCCGAACTTGTACGAGCCCTGCAGCAGGTAGCCATCACTGTCGACATTGCGCAAAACCGGTTCGCCGGCATTGTTGGTGAAGAACGGGTTGATGCCTTTGGCCTGGAACCCCGAGCCGGTCAG‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑  <  AE015451/3049803‑3049681 ‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑‑GGGGTTATGCCGAGATAAGGCAAAAATTAGGACATTCGTTCTGTAAATATATGATTTAAAAGGTTATTCGAGAGGCCGTGGCTTGCTGGTCATCCACCGTCTGGCTAGCCGTCTATGCTGATGC  >  AE015451/3366553‑3366676

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.