| Predicted mutation | |||||||
|---|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | freq | annotation | gene | description |
| RA | NC_000913 | 1,531,598 | A→T | 20.9% | intergenic (‑1094/‑218) | yncO ← / → ydcC | protein YncO/H repeat‑associated putative transposase YdcC |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NC_000913 | 1,531,598 | 0 | A | T | 20.9% | 37.2 / 2.5 | 19 | intergenic (‑1094/‑218) | yncO/ydcC | protein YncO/H repeat‑associated putative transposase YdcC |
| Reads supporting (aligned to +/- strand): ref base A (9/6); new base T (2/2); total (11/8) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.72e-01 | |||||||||||
TCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAATTTGCACATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAGAAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACA > NC_000913/1531379‑1531779 | tCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAATTTGCACATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGAACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAaaagaa > 1:67350/1‑275 (MQ=255) agcagAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAATTTGCACATGCTATCAGAGCGCGCTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAaaagaaag > 1:152147/1‑248 (MQ=255) ggTGTATGCATCCGATATTATATTTCATCAAAGGATATGGCTGCTAAAGAATTTGCACATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAAGGAATGAAGATGCCAGCCGGATAGGAAGAGTAAACGCAACATAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGAGAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAGCACAGGGAAAGgtcaaaaga > 1:119883/1‑270 (MQ=255) tAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAATTTGCACATGCTATCAGAGCGCACTGGCGGATCTAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAGAAGtt > 1:124816/1‑275 (MQ=255) atcatattTCATCAAAGGAGATGGTTGGTAAAGAATTTGCACATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTACATTGGGTGTAAGATGTAAAAATGAATGAAGATGCCGGCCGGATAAGAAGAGGAGACGCAGCCTAAATAATATCTGGAATAAagaaga < 2:59592/165‑1 (MQ=255) tggaaaaggCTATCAGAGCGAACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAGAAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGata < 2:67350/267‑1 (MQ=255) tGCTATCAGAGCGCACTGGCTGATCGAGAACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCCGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAACGACAGTAAGGGTGAAGAGCAAAAGAAAGCAGGCTGCGTTAAACACAGGGAAAGATCATCAGAAGTTCACTTTTTCTACTAAACAATTCGCCTTTACTGTTTATAAATTGAGATATTCCtta > 1:240050/1‑275 (MQ=255) cgcACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTa > 1:178000/1‑183 (MQ=255) cgcACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGAAAAGATCATCAGAAGTTCa > 1:111873/1‑211 (MQ=255) cTGGCTTATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGTAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAaca < 2:178000/183‑1 (MQ=255) cTGGCTGATCGAGCAACGGATTCATTGGGTGTTAGATGTAANAATGAATGAAGATGACAGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACGGAATTTATTAAGATATTGCAAAGACATTAAGGGTGAAGAGTAAAAGAAAGAAGGCTGCGTTAAACACAAGGAAAGACCATCCGAAGGTCACttt < 2:111873/211‑1 (MQ=255) aGTATTCATTGGGTGTAAGATGGAAAAATGAATGAAGATGCCAGCCGGGTAAGAAGAGGAAACGCAGCCTAAATAATATCTTGAATAAAGAAGATGGTACTGAAGTTATTAAGAGATTTCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAGAAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTGATTACCTAAAGCTGTTTTTTATTGCTTaca < 2:119883/273‑1 (MQ=255) gagGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTGAAACACAGGCAAAGATCATCAGAAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCt > 1:40592/1‑195 (MQ=255) aaaCGCAGCCTAAATAATATCTGGAATAAAAAAGATGGAACTGTATTTATTAAGGGATTGCAAAGACCTTAAAGGTGAAGAGGAAAAGAAAGAAGGGTTCGTTAAACACAGGGAAAGAGCATCAGAAGTTCACTTTTTGTACAAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCGTATTACCTAAAg < 2:40592/195‑1 (MQ=37) cTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAGAAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTc > 1:19207/1‑172 (MQ=255) ataataTCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAGAAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCtta < 2:19207/172‑1 (MQ=255) ggAATAAAGAAGTTGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAGAAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTa > 1:19428/1‑190 (MQ=255) ggAATAAAGAAGTTGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAGAAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTa > 1:19421/1‑190 (MQ=255) tAAAGAAGTTGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAGAAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTAcaca < 2:19421/190‑1 (MQ=255) tAAAGAAGTTGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAGAAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTAcaca < 2:19428/190‑1 (MQ=255) agaagaTGGCATTGAATTTATTAAGAGATTGCAAAGAAATTAAGGGTGAAGAGGAAGAGAAAGAAGGCTGCGTTATACACAGGGAAAGATCATCAGAAGTTCACTTTTTGTACTAAACAATTCGACTTTTATGTTTAACAATTGAGCTATTCCTTATTACCTAAAGCTGttt > 2:245242/1‑172 (MQ=255) gaTGGCACTGAATTTATTAAGAGAATGCAAAGACATGAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAGAAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTAGTACCTAAAGCTGTTTTTTa < 1:245242/172‑1 (MQ=255) | TCATTCAGGCAGAAGAAAGAAGATAAATCAGCAGAAGGTGTAAGCATCCGATATTATATTTCATCAAAGGATATGGATGCTAAAGAATTTGCACATGCTATCAGAGCGCACTGGCTGATCGAGCACAGTCTTCATTGGGTGTTAGATGTAAAAATGAATGAAGATGCCAGCCGGATAAGAAGAGGAAACGCAGCCTAAATAATATCTGGAATAAAGAAGATGGCACTGAATTTATTAAGAGATTGCAAAGACATTAAGGGTGAAGAGGAAAAGAAAGAAGGCTGCGTTAAACACAGGGAAAGATCATCAGAAGTTCACTTTTTGTACTAAACAATTCGCATTTTATGTTTAAAAATTGAGATATTCCTTATTACCTAAAGCTGTTTTTTATTGCTTACACA > NC_000913/1531379‑1531779 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 11 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |