New junction evidence | |||||||||||
---|---|---|---|---|---|---|---|---|---|---|---|
seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
* | ? | AC_000091 | = 1398951 | NA (NA) | 155 (1.170) | 80/176 | 0.7 | 100% | intergenic (+145/‑128) | insH/ynaJ | IS5 transposase and trans‑activator/predicted inner membrane protein |
? | AC_000091 | 1401960 = | 0 (0.000) | intergenic (‑10/+1) | ogt/abgT | O‑6‑alkylguanine‑DNA:cysteine‑protein methyltransferase/predicted cryptic aminobenzoyl‑glutamate transporter |
Only 100 of 170 total aligned reads displayed.
CGCAGGCGAAATTGCTCATCGCAAATCACCCACAGTGGACCCAGTGGCGTGGCAATTTTTTCTTCAAGTAATCTCAGCATCCGTTCTCTCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGA > AC_000091/1401871‑1402049 | gcatttacgggagaaaaaatcggctcaagcatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc < 1:1531133‑M2/1‑1 (MQ=255) gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc < 1:322638‑M2/1‑1 (MQ=255) gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc > 1:2082179‑M2/90‑90 (MQ=255) gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc > 2:3381357‑M2/90‑90 (MQ=255) gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc < 2:313461‑M2/1‑1 (MQ=255) gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc > 2:2744607‑M2/90‑90 (MQ=255) gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc > 1:745870‑M2/90‑90 (MQ=255) gcatttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcc < 2:2212385‑M2/1‑1 (MQ=255) catttaggggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttccg > 2:2897963‑M2/89‑89 (MQ=255) catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcct < 1:2329302‑M2/2‑1 (MQ=255) catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcct < 1:2589823‑M2/2‑1 (MQ=255) catttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcct > 2:2359565‑M2/89‑90 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcctt > 2:952517‑M2/88‑90 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcctt > 2:2234548‑M2/88‑90 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcctt > 1:1711166‑M2/88‑90 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcctt < 2:2472480‑M2/3‑1 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcctt > 2:2639530‑M2/88‑90 (MQ=255) atttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcctt < 1:1099067‑M2/3‑1 (MQ=255) atttacgggagaaaaaagcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcctt < 1:1037570‑M2/3‑1 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTa > 2:1976379‑M2/87‑90 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTa < 1:3424210‑M2/4‑1 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTa < 1:2213357‑M2/4‑1 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTa < 2:851540‑M2/4‑1 (MQ=255) tttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTa < 1:235786‑M2/4‑1 (MQ=255) ttacgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTaa < 2:2112971‑M2/5‑1 (MQ=255) acgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGa < 2:1918927‑M2/7‑1 (MQ=255) acgggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGa < 2:1540123‑M2/7‑1 (MQ=255) acgggagaaaaaatcggctcaaacatgaagaaatgaaatcactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGa < 1:1025537‑M2/7‑1 (MQ=255) gggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACa < 1:1383950‑M2/9‑1 (MQ=255) ggagaaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACaa < 2:2554064‑M2/10‑1 (MQ=255) aaaaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGt > 2:11022‑M2/77‑90 (MQ=255) aaaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTgg < 2:1753564‑M2/16‑1 (MQ=255) aaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTggg < 1:3317368‑M2/17‑1 (MQ=255) aaatcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTggg > 2:1068357‑M2/74‑90 (MQ=255) tcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTaa > 1:829558‑M2/71‑90 (MQ=255) tcggctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTaa < 2:2943076‑M2/20‑1 (MQ=255) gctcaaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATa > 1:1291840‑M2/68‑90 (MQ=255) caaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATAccc > 2:2436553‑M2/65‑90 (MQ=255) aaacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCg < 1:1954292‑M2/27‑1 (MQ=255) aacatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCgg > 1:2435572‑M2/63‑90 (MQ=255) acatgaagaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGa < 2:900076‑M2/29‑1 (MQ=255) agaaatcaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTata > 2:3450071‑M2/56‑89 (MQ=255) gaaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCg < 1:2398316‑M2/36‑1 (MQ=255) aaatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCgg > 1:613353‑M2/54‑90 (MQ=255) aatgaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGc < 2:1140105‑M2/38‑1 (MQ=255) aatgaaatgactgaggcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTAGCGGc > 2:2000855‑M2/53‑90 (MQ=255) gaaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGa > 1:2974708‑M2/50‑90 (MQ=255) aaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGAc < 2:1638552‑M2/42‑1 (MQ=255) aaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGAc > 2:1485613‑M2/49‑90 (MQ=255) aaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGAc < 1:862387‑M2/42‑1 (MQ=255) aaatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGAc > 1:1041077‑M2/49‑90 (MQ=255) aatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGAcc < 1:1826736‑M2/43‑1 (MQ=255) aatgactgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACCTGGGTAAATACCCGGACCTATCGGCAGAcc < 2:2218151‑M2/43‑1 (MQ=255) ctgagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACaa < 1:2024162‑M2/48‑1 (MQ=255) gagtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGa > 1:947634‑M2/41‑90 (MQ=255) agtcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGAt > 1:101740‑M2/40‑90 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATAc > 1:161969‑M2/38‑90 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATAc > 2:2336903‑M2/38‑90 (MQ=255) tcagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATAc > 1:2006226‑M2/38‑90 (MQ=255) cagccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATAcc < 1:1573962‑M2/54‑1 (MQ=255) gccgggaagaatttcccctcttattcgcaccttcCTTAAGACAAACGTGGGTAAATCCCCGGACCTATCGGCAGACCGACAAGATACCAc < 2:3031587‑M2/56‑1 (MQ=255) gccgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCAc > 1:372010‑M2/35‑90 (MQ=255) cgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGc > 1:1469338‑M2/33‑90 (MQ=255) cgagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGc > 1:2102107‑M2/33‑90 (MQ=255) gagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGcc > 2:279085‑M2/32‑90 (MQ=255) gagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGcc > 1:2291763‑M2/32‑90 (MQ=255) gagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGcc > 1:3174103‑M2/32‑90 (MQ=255) gagaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGcc < 2:1567416‑M2/59‑1 (MQ=255) gaagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCCCGCCAg > 2:2716741‑M2/30‑90 (MQ=255) aagaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGc < 2:2375524‑M2/62‑1 (MQ=255) gaatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCaa < 1:455106‑M2/64‑1 (MQ=255) aatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAAc > 2:3476913‑M2/26‑90 (MQ=255) aatttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAAc < 2:725413‑M2/65‑1 (MQ=255) ttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATc > 1:2786860‑M2/23‑90 (MQ=255) ttccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATc < 2:1874644‑M2/68‑1 (MQ=255) tccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATca < 2:1719880‑M2/69‑1 (MQ=255) tccccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATca < 1:2037346‑M2/69‑1 (MQ=255) cccctcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATcag < 1:495550‑M2/70‑1 (MQ=255) cccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATcagc < 1:1861678‑M2/71‑1 (MQ=255) cccgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATcagc < 2:1381958‑M2/71‑1 (MQ=255) cgcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATcagcag < 1:3414133‑M2/73‑1 (MQ=255) cgcttatcccccccttcCTAAAGACAAACGTGGGTAAATCCCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATcagcag < 1:2709556‑M2/73‑1 (MQ=255) gcttattcgcaccttcCTTAAGACGAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCagcagc > 1:1803003‑M2/17‑90 (MQ=255) gcttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCagcagc < 1:223730‑M2/74‑1 (MQ=255) cttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGcc > 1:583882‑M2/16‑90 (MQ=255) cttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGcc < 2:419534‑M2/75‑1 (MQ=255) ttattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCa < 1:63897‑M2/76‑1 (MQ=255) tattcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCAt > 2:3115314‑M2/14‑90 (MQ=255) ttcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATac < 2:3311520‑M2/79‑1 (MQ=255) tcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATacc > 1:1927649‑M2/11‑90 (MQ=255) tcgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATacc > 1:692524‑M2/11‑90 (MQ=255) cgcaccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATacca > 1:1612038‑M2/10‑90 (MQ=255) cccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGCCCGACAAGATACCACGCCAGCAACATCAGCAGCCATAccacca < 2:586548‑M2/84‑1 (MQ=255) ccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCaa > 1:3051865‑M2/6‑90 (MQ=255) ccttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCaa < 2:934779‑M2/85‑1 (MQ=255) ttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCaaaa > 1:3183583‑M2/4‑90 (MQ=255) ttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCaaaa < 2:2409465‑M2/87‑1 (MQ=255) ttcCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCaaaa > 2:1393268‑M2/4‑90 (MQ=255) cCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAg > 1:2644603‑M2/2‑90 (MQ=255) CTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGa < 2:896659‑M2/90‑1 (MQ=255) | CGCAGGCGAAATTGCTCATCGCAAATCACCCACAGTGGACCCAGTGGCGTGGCAATTTTTTCTTCAAGTAATCTCAGCATCCGTTCTCTCTTAAGACAAACGTGGGTAAATACCCGGACCTATCGGCAGACCGACAAGATACCACGCCAGCAACATCAGCAGCCATACCACCAAAAAGA > AC_000091/1401871‑1402049 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 22 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
Reads not counted as support for junction |
read_name Not counted due to insufficient overlap past the breakpoint. |
read_name Not counted due to not crossing MOB target site duplication. |