| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| MC JC | AC_000091 | 3,742,936 | Δ1,336 bp | insD–insC | insD, insC | |
| Missing coverage evidence... | ||||||||||
|---|---|---|---|---|---|---|---|---|---|---|
| seq id | start | end | size | ←reads | reads→ | gene | description | |||
| * | * | ÷ | AC_000091 | 3742936–3744264 | 3744271 | 8–1336 | 165 [0] | [0] 166 | insD–insC | insD,insC |
| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AC_000091 | = 3742935 | 0 (0.000) | 151 (1.240) | 91/162 | 0.1 | 100% | intergenic (‑123/+9) | yieE/insD | predicted phosphopantetheinyl transferase/IS2 element protein |
| ? | AC_000091 | 3744272 = | 0 (0.000) | intergenic (‑100/+21) | insC/yidZ | IS2 element protein/predicted DNA‑binding transcriptional regulator | |||||
Only 100 of 166 total aligned reads displayed.
ATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTATGGCTGTT > AC_000091/3744183‑3744361 | tttactggaatgatggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggg < 2:2784848‑M2/1‑1 (MQ=255)ttgactggaatgatggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggg > 1:110670‑M2/90‑90 (MQ=255) tactggaatgatggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTc > 2:3223891‑M2/88‑90 (MQ=255) tactggaatgatggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTc > 2:2937695‑M2/88‑90 (MQ=255) attggaatgatggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTcg > 1:2048090‑M2/87‑90 (MQ=255) actggaatgatggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTcg > 2:1514254‑M2/87‑90 (MQ=255) tggaatgatggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTcgcg > 2:2748241‑M2/85‑90 (MQ=255) tggaatgatggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTcgcg < 2:2077503‑M2/6‑1 (MQ=255) gatggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCAt > 1:640746‑M2/79‑90 (MQ=255) atggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATa > 2:2442341‑M2/78‑90 (MQ=255) tggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATAc < 1:1152995‑M2/14‑1 (MQ=255) ggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACg < 2:292360‑M2/15‑1 (MQ=255) ggacagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACg > 1:2289248‑M2/76‑90 (MQ=255) cagactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGAtt < 2:1917292‑M2/18‑1 (MQ=255) agactaaagcggctagaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTc > 2:822326‑M2/72‑90 (MQ=255) agactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTc > 2:1768465‑M2/72‑90 (MQ=255) gactaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCg > 2:909483‑M2/71‑90 (MQ=255) actaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCgg < 2:778801‑M2/21‑1 (MQ=255) ctaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGt > 2:2075628‑M2/69‑90 (MQ=255) ctaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGt < 1:3073583‑M2/22‑1 (MQ=255) ctaaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGt > 2:1653986‑M2/69‑90 (MQ=255) taaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGtt > 2:1675199‑M2/68‑90 (MQ=255) aaagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTa > 1:1919073‑M2/67‑90 (MQ=255) aagcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGCTTCATACGATTCGGTTAt > 2:247239‑M2/66‑90 (MQ=255) agcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATg > 2:1665048‑M2/65‑90 (MQ=255) agcggctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATg > 1:2697664‑M2/65‑90 (MQ=255) gctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCAt < 2:1399002‑M2/30‑1 (MQ=255) ctaaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATc > 2:3356668‑M2/60‑90 (MQ=255) taaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCg > 2:2298036‑M2/59‑90 (MQ=255) aaaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGa > 2:2905553‑M2/58‑90 (MQ=255) aaagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGAc < 2:601019‑M2/34‑1 (MQ=255) aagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGAcg < 1:3400005‑M2/35‑1 (MQ=255) aagttcgattcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGAcg < 2:149295‑M2/35‑1 (MQ=255) ttcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAgg > 1:1282026‑M2/48‑90 (MQ=255) tcagacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGt < 1:1211458‑M2/44‑1 (MQ=255) agacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGttt > 1:3224067‑M2/45‑90 (MQ=255) gacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGtttt > 2:1448841‑M2/44‑90 (MQ=255) gacaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGtttt < 1:2702149‑M2/47‑1 (MQ=255) acaagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGttttt > 1:1613105‑M2/43‑90 (MQ=255) caagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTa > 2:3410480‑M2/42‑90 (MQ=255) caagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTa > 1:472572‑M2/42‑90 (MQ=255) aagcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTaa < 2:2164880‑M2/50‑1 (MQ=255) agcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGTGTAAAGGTTTTTAAt > 1:2161476‑M2/40‑90 (MQ=255) agcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAAt < 2:3430345‑M2/51‑1 (MQ=255) agcttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAAt > 1:3060548‑M2/40‑90 (MQ=255) cttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATgg > 1:2257515‑M2/38‑90 (MQ=255) cttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATgg < 2:2846683‑M2/53‑1 (MQ=255) cttattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGGAAAGGGTTTTAATgg > 1:1353340‑M2/38‑90 (MQ=255) tattacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGGTATGCCATCGACGCGTAAAGGTTTTTAATGGtt > 1:3154637‑M2/36‑90 (MQ=255) ttacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTc < 1:376038‑M2/57‑1 (MQ=255) tacaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTcc < 1:1218037‑M2/58‑1 (MQ=255) tacaacttttttacattttattgtgaaattggGTAGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTcc > 2:1254445‑M2/33‑90 (MQ=255) acaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTccc < 2:1822090‑M2/59‑1 (MQ=255) acaacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTccc > 2:2140489‑M2/32‑90 (MQ=255) caacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCg > 2:2463152‑M2/31‑90 (MQ=255) caacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCg > 1:2918619‑M2/31‑90 (MQ=255) caacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCg > 1:639660‑M2/31‑90 (MQ=255) aacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGt > 1:3178967‑M2/30‑90 (MQ=255) aacttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGATTTTAATGGTTTCCCGt > 2:126103‑M2/30‑90 (MQ=255) acttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTa < 2:2997247‑M2/62‑1 (MQ=255) acttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTa > 1:2765478‑M2/29‑90 (MQ=255) cttttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTaa < 2:2247857‑M2/63‑1 (MQ=255) tttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAcc < 1:1124570‑M2/65‑1 (MQ=255) tttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAcc > 1:2469479‑M2/26‑90 (MQ=255) tttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAAcc > 1:2793016‑M2/26‑90 (MQ=255) ttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCa > 2:1947339‑M2/25‑90 (MQ=255) ttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCa > 1:3365914‑M2/25‑90 (MQ=255) ttttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCa > 1:66222‑M2/25‑90 (MQ=255) tttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAg > 1:1941031‑M2/24‑90 (MQ=255) tttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAg > 1:108426‑M2/24‑90 (MQ=255) ttacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGa > 2:2162958‑M2/23‑90 (MQ=255) tacattttattgtgaaattggTTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGAc < 2:3184567‑M2/69‑1 (MQ=255) tacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCCTCTGCGCGTAAAGGATATTAATGGTTTGCCGTAACcagcc > 2:3117012‑M2/22‑88 (MQ=255) tacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGAc > 2:2653142‑M2/22‑90 (MQ=255) tacattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGAc < 1:3289798‑M2/69‑1 (MQ=255) acattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACg < 2:1120331‑M2/70‑1 (MQ=255) acattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACg < 2:1014357‑M2/70‑1 (MQ=255) cattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGa > 2:1404439‑M2/20‑90 (MQ=255) cattttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGa > 1:2029204‑M2/20‑90 (MQ=255) tttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCt > 2:2290176‑M2/17‑90 (MQ=255) tttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCt < 1:458550‑M2/74‑1 (MQ=255) tttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGAAACCAGACGATCt > 2:3394797‑M2/17‑90 (MQ=255) ttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCtt > 1:122587‑M2/16‑90 (MQ=255) ttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCtt < 2:2511164‑M2/75‑1 (MQ=255) ttattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCtt > 1:1973746‑M2/16‑90 (MQ=255) tattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTc < 1:158467‑M2/76‑1 (MQ=255) tattgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTc > 2:498073‑M2/15‑90 (MQ=255) attgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCg > 1:10799‑M2/14‑90 (MQ=255) attgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCg > 2:3238930‑M2/14‑90 (MQ=255) ttgtgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTATAATGGTTTCCCGTAACCAGACGATATTCgg > 1:1792392‑M2/13‑90 (MQ=255) tgaaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGAtt > 1:3164307‑M2/10‑90 (MQ=255) aaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTAt > 1:3252012‑M2/8‑90 (MQ=255) aaattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTAt > 2:2662282‑M2/8‑90 (MQ=255) aattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTATg < 1:1652714‑M2/84‑1 (MQ=255) aattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTATg > 1:586468‑M2/7‑90 (MQ=255) aattggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTATg > 1:3115292‑M2/7‑90 (MQ=255) attggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTATgg > 2:3485378‑M2/6‑90 (MQ=255) tggGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTATGGCt > 2:1180204‑M2/4‑90 (MQ=255) gGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTCTGGCTGt > 1:3024969‑M2/2‑90 (MQ=255) gTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTATGGCTGtt < 2:3116640/90‑1 (MQ=255) | ATGACTAGTCTAAAAACTAGTATTAAGACTATCACTTATTTAAGTGATATTGGTTGTCTGGAGATTCAGGGGGCCAGTCTAGAAATTGGGTCGCGTTTCATACGATTCGGTTATGCCATCGACGCGTAAAGGTTTTTAATGGTTTCCCGTAACCAGACGATCTTCGGATTATGGCTGTT > AC_000091/3744183‑3744361 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |