| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | AC_000091 | = 4310362 | 0 (0.000) | 129 (1.010) | 85/170 | 0.3 | 98.9% | intergenic (‑286/‑69) | yjcS/insH | predicted alkyl sulfatase/IS5 element protein |
| ? | AC_000091 | 4311562 = | 3 (0.020) | coding (916/1029 nt) | alsK | D‑allose kinase | |||||
Only 100 of 136 total aligned reads displayed.
ACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAATAAAGCGCA > AC_000091/4311474‑4311651 | tttatgtgtttattatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagca < 1:752494‑M2/2‑1 (MQ=255)tttatgtgtttattatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagca > 2:1139211‑M2/89‑90 (MQ=255)tttatgtgtttattatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagca > 2:242912‑M2/89‑90 (MQ=255) ttatgtgtttattatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagcac > 2:288009‑M2/88‑90 (MQ=255) cGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGcac < 1:38324/90‑1 (MQ=31) tatgtgtttattatatatattgtacctgtcgttggcacagcgtgacattgcgctactgtgccaacgttttactcatggggctttagcaca < 1:2689656‑M2/4‑1 (MQ=255) tatgtgtttattatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagcaca > 1:391401‑M2/87‑90 (MQ=255) atgtgtttattatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAg > 1:3077339‑M2/86‑90 (MQ=255) atgtgtttattatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAg > 1:870398‑M2/86‑90 (MQ=255) atgtgtttattatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAg < 2:1333750‑M2/5‑1 (MQ=255) atgtgtttattatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAg < 1:1274361‑M2/5‑1 (MQ=255) atgtgtttattatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAg > 2:8312‑M2/86‑90 (MQ=255) atgtgtttattatatatattgtaccggtcgttggcacagcgggacattgcgctactgtgacaacgttttactcatggggctttagCACAg > 1:2848301‑M2/86‑90 (MQ=255) gtgtttattatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGaa < 2:185786‑M2/7‑1 (MQ=255) gtgtttattatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGaa < 2:58729‑M2/7‑1 (MQ=255) gtgtttattatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGaa > 1:2286918‑M2/84‑90 (MQ=255) tgtttattatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAAc > 1:132405‑M2/83‑90 (MQ=255) gtttattatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACt > 1:489284‑M2/82‑90 (MQ=255) ttattatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACtgt > 2:1435717‑M2/80‑90 (MQ=255) attatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTgg > 1:1027879‑M2/78‑90 (MQ=255) attatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTgg < 2:401053‑M2/13‑1 (MQ=255) ttatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGc > 1:1146678‑M2/77‑90 (MQ=255) ttatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGc > 1:2406285‑M2/77‑90 (MQ=255) tatatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCa < 1:1029305‑M2/15‑1 (MQ=255) atatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCaa < 1:1881285‑M2/16‑1 (MQ=255) tatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCaaa < 1:2287006‑M2/17‑1 (MQ=255) tatatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCaaa > 1:3210545‑M2/74‑90 (MQ=255) atatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCaaaa > 1:1210949‑M2/73‑90 (MQ=255) atatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCaaaa < 1:1737435‑M2/18‑1 (MQ=255) tatattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCaaaaa > 1:835906‑M2/72‑90 (MQ=255) atattgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCaaaaaa > 1:1449197‑M2/71‑90 (MQ=255) attgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAACAAACg > 1:1526083‑M2/69‑90 (MQ=255) attgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACg > 2:2500303‑M2/69‑90 (MQ=255) attgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACg > 1:2662295‑M2/69‑90 (MQ=255) ttgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGt > 2:1258‑M2/68‑90 (MQ=255) ttgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGt > 1:3355648‑M2/68‑90 (MQ=255) tgtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGtt > 1:867883‑M2/67‑90 (MQ=255) gtacctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTg > 1:1948544‑M2/66‑90 (MQ=255) acctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGAt < 2:1767800‑M2/27‑1 (MQ=255) acctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGAt > 1:325911‑M2/64‑90 (MQ=255) cctgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATg < 1:1057968‑M2/28‑1 (MQ=255) tgtcgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATgcg > 1:3035809‑M2/61‑90 (MQ=255) cgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCa < 1:1493655‑M2/33‑1 (MQ=255) cgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCa < 1:2407485‑M2/33‑1 (MQ=255) cgttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCa < 1:830259‑M2/33‑1 (MQ=255) gttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCaa > 1:3286076‑M2/57‑90 (MQ=255) gttggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCaa > 1:1473551‑M2/57‑90 (MQ=255) tggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAata < 2:1171087‑M2/36‑1 (MQ=255) tggcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAata > 2:38621‑M2/55‑90 (MQ=255) gcacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATAtt < 1:2084526‑M2/38‑1 (MQ=255) cacagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATtg > 2:627873‑M2/52‑90 (MQ=255) cagcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATtgct < 2:1008743‑M2/41‑1 (MQ=255) agcgggacatttcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATtgctg < 2:311024‑M2/42‑1 (MQ=255) agcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATtgctg > 1:579473‑M2/49‑90 (MQ=255) agcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATtgctg < 1:1864340‑M2/42‑1 (MQ=255) agcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATtgctg < 2:2170905‑M2/42‑1 (MQ=255) gcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATtgctgc < 1:2683244‑M2/43‑1 (MQ=255) gcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATtgctgc < 1:3254225‑M2/43‑1 (MQ=255) gcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATtgctgc < 1:2350757‑M2/43‑1 (MQ=255) gcgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATtgctgc < 2:2969726‑M2/43‑1 (MQ=255) cgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCa < 1:1696072‑M2/44‑1 (MQ=255) cgggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCa > 2:1430315‑M2/47‑90 (MQ=255) ggacattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCAcc < 2:2044447‑M2/46‑1 (MQ=255) acattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCt < 2:203709‑M2/48‑1 (MQ=255) acattgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCt < 2:1932754‑M2/48‑1 (MQ=255) attgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGa < 2:3323214‑M2/50‑1 (MQ=255) attgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGa < 1:2402725‑M2/50‑1 (MQ=255) ttgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAg < 1:253452‑M2/51‑1 (MQ=255) ttgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAg < 2:466307‑M2/51‑1 (MQ=255) ttgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAg < 1:375569‑M2/51‑1 (MQ=255) tgcgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAgc < 2:1538458‑M2/52‑1 (MQ=255) tgcgctactgtgccaacgttttactcatggggctatagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAgc < 2:2779773‑M2/52‑1 (MQ=255) cgctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAgcgc < 2:509328‑M2/54‑1 (MQ=255) gctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGcc < 2:1528533‑M2/55‑1 (MQ=255) gctactgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGcc < 1:1690307‑M2/55‑1 (MQ=255) tgtgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTaa > 2:2924432‑M2/31‑90 (MQ=255) tgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAACACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAg < 2:1722686‑M2/62‑1 (MQ=255) tgccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAg < 1:2815062‑M2/62‑1 (MQ=255) gccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGt < 1:2329296‑M2/63‑1 (MQ=255) ccaacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTc > 2:2812735‑M2/27‑90 (MQ=255) caacgttttactcatggggctttagCACAGAACTGGGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGCCa > 2:1555963‑M2/26‑90 (MQ=255) aacgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCag < 2:2261907‑M2/66‑1 (MQ=255) acgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCaga < 1:1667637‑M2/67‑1 (MQ=255) cgttttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCagaa < 2:1309558‑M2/68‑1 (MQ=255) gttttactcatggggctttagCACAGAACTGTGGCAAAAAACTTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCagaag < 2:627880‑M2/69‑1 (MQ=255) tttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGAt < 2:1799475‑M2/71‑1 (MQ=255) ttactcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATg > 1:1653428‑M2/19‑90 (MQ=255) ttactcatggggctatagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCCCCCTGAGCGCCATTAAAGTCAGAAGATg < 1:2566047‑M2/72‑1 (MQ=255) tcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAggc < 2:904794‑M2/76‑1 (MQ=255) tcatggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAggc < 1:333180‑M2/76‑1 (MQ=255) catggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTTAAGTCAGAAGATGAggcg < 1:2868119‑M2/77‑1 (MQ=255) atggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAggcgg < 1:894434‑M2/78‑1 (MQ=255) atggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAggcgg < 2:3009869‑M2/78‑1 (MQ=255) atggggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAggcgg > 2:2524511‑M2/13‑90 (MQ=255) ggctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAAt < 2:1907614‑M2/82‑1 (MQ=255) gctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAATa < 2:3354236‑M2/83‑1 (MQ=255) ctttagCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAATaa < 1:1214065‑M2/84‑1 (MQ=255) agCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAATAAAgcg < 1:2709856‑M2/88‑1 (MQ=255) cacaGAACTGTGGCAAAAAACGTTGATGCTCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAACATGAGGCGGCAATAAAGCGCa < 2:2514298/90‑1 (MQ=255) cacaGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAATAAAGCGCa > 2:2367300/1‑90 (MQ=255) | ACGGGAGAAAAAATCGGCTCAAACATGAAGAAATGAAATGACTGAGTCAGCCGAGAAGAATTTCCCCGCTTATTCGCACCTTCCTTAGCACAGAACTGTGGCAAAAAACGTTGATGCGCCAATATTGCTGCACCCTGAGCGCCATTAAAGTCAGAAGATGAGGCGGCAATAAAGCGCA > AC_000091/4311474‑4311651 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |