Missing coverage evidence...
   seq id start end size ←reads reads→ gene description
* * ÷ AC_000091 1397797–1398957 1401959 3003–4163 69 [66] [0] 170 [insH]–ogt [insH],ynaJ,uspE,fnr,ogt

AATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTA  >  AC_000091/1397707‑1397841
                                                                                         |                                             
aaTTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTg                                               >  2:3270592/1‑90 (MQ=255)
aaTTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTg                                               >  2:3084299/1‑90 (MQ=255)
aaTTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTg                                               <  2:3072685/90‑1 (MQ=255)
  ttcattcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTc                                             >  1:1869055/1‑90 (MQ=255)
  ttcattcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTc                                             <  1:1313111/90‑1 (MQ=255)
  ttcattcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTc                                             <  2:2846122/90‑1 (MQ=255)
  ttcattcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTc                                             <  1:3121219/90‑1 (MQ=255)
  ttcattcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTc                                             <  1:2599870/90‑1 (MQ=255)
    cattcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCAt                                           >  2:1048360/1‑90 (MQ=255)
    cattcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCAt                                           >  1:2970627/1‑90 (MQ=255)
     attcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATc                                          >  2:696901/1‑90 (MQ=255)
     attcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATc                                          <  1:2436907/90‑1 (MQ=255)
     attcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATc                                          >  1:407857/1‑90 (MQ=255)
     attcaGATCATCAATAGACAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATc                                          <  2:2535028/90‑1 (MQ=255)
       tcaGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTg                                        <  2:2320901/90‑1 (MQ=255)
        caGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAATGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTgg                                       <  2:2200110/90‑1 (MQ=255)
        caGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTgg                                       <  1:3088700/90‑1 (MQ=255)
          gATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAg                                     <  1:2155099/90‑1 (MQ=255)
          gATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAg                                     <  2:3150794/90‑1 (MQ=255)
          gATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAg                                     <  2:2567429/90‑1 (MQ=255)
           atcatcAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGc                                    >  1:726533/1‑90 (MQ=255)
           atcatcAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCCGATATGAGATCATGTTTGTCATCTGGAGc                                    >  1:986916/1‑90 (MQ=255)
            tcatcaATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGcc                                   >  1:844767/1‑90 (MQ=255)
             catcaATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCa                                  >  1:2556441/1‑90 (MQ=255)
             catcaATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCa                                  <  2:2572814/90‑1 (MQ=255)
               tcaATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATa                                <  2:3097981/90‑1 (MQ=255)
                caATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAg                               >  1:1873661/1‑90 (MQ=255)
                 aaTAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGa                              >  1:1554458/1‑90 (MQ=255)
                 aaTAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGa                              >  1:2439149/1‑90 (MQ=255)
                  aTAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGaa                             >  1:24783/1‑90 (MQ=255)
                   tAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAc                            <  1:2950678/90‑1 (MQ=255)
                   tAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAAc                            >  2:649992/1‑90 (MQ=255)
                    aGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACa                           <  2:1735061/90‑1 (MQ=255)
                      tCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAgg                         >  2:277784/1‑90 (MQ=255)
                      tCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAgg                         >  2:237262/1‑90 (MQ=255)
                        aGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGt                       >  1:422397/1‑90 (MQ=255)
                         gggAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGtt                      <  2:3316952/90‑1 (MQ=255)
                         gggAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGtt                      <  2:2999089/90‑1 (MQ=255)
                         gggAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGtt                      <  1:2812454/90‑1 (MQ=255)
                          ggaaggaaGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtc                     <  2:1642776/90‑1 (MQ=255)
                           gaaggaagTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtca                    <  2:43427/90‑1 (MQ=255)
                           gaaggaagTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtca                    >  2:3404213/1‑90 (MQ=255)
                           gaaggaagTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtca                    <  1:799776/90‑1 (MQ=255)
                             aggaagTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTtcatc                  >  1:579926/1‑90 (MQ=255)
                             aggaagTAGAAACATTAGCTAAGGAAGGTGCTAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCAATAGAACGGGGGtcatg                  >  2:2291774/1‑89 (MQ=17)
                               gaagTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTcatcat                >  1:478245/1‑90 (MQ=255)
                               gaagTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTcatcat                >  2:569514/1‑90 (MQ=255)
                               gaagTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTcatcat                >  2:45446/1‑90 (MQ=255)
                               gaagTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTcatcat                <  1:2320236/90‑1 (MQ=255)
                                aagTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATg               <  2:2797265/90‑1 (MQ=255)
                                aagTAGCAACATTAGCTAAGGAAGCTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATg               <  1:2829044/90‑1 (MQ=255)
                                  gTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAg             <  2:2967510/90‑1 (MQ=255)
                                  gTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAg             >  1:539520/1‑90 (MQ=255)
                                  gTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAg             >  2:1740402/1‑90 (MQ=255)
                                  gTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAg             <  2:1228688/90‑1 (MQ=255)
                                    aGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtc           <  2:248198/90‑1 (MQ=255)
                                     gCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtca          >  2:703620/1‑90 (MQ=255)
                                     gCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtca          <  1:2198054/90‑1 (MQ=255)
                                     gCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGACCATGTTTTTCATCCGGAGCCATAGACCAGGGTTCATCATGAGtca          <  1:2356633/90‑1 (MQ=14)
                                      cAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcat         >  2:3247926/1‑90 (MQ=40)
                                        aCATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGtcatca       >  2:2597641/1‑90 (MQ=38)
                                         cATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCaa      <  1:2303890/90‑1 (MQ=37)
                                         cATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCaa      <  2:2843098/90‑1 (MQ=37)
                                         cATTAGCTAAGGAAGGGGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCaa      >  2:2209101/1‑90 (MQ=37)
                                          aTTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAAc     >  2:30815/1‑90 (MQ=35)
                                          aTTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAAc     >  1:1910972/1‑90 (MQ=35)
                                            tAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACtt   >  1:861415/1‑90 (MQ=32)
                                            tAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACtt   >  1:1789785/1‑90 (MQ=32)
                                             aGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTa  >  2:230509/1‑90 (MQ=31)
                                                                                         |                                             
AATTCATTCAGATCATCAATAGTCAGGGAAGGAAGTAGCAACATTAGCTAAGGAAGGTGCGAACAAGTCCCTGATATGAGATCATGTTTGTCATCTGGAGCCATAGAACAGGGTTCATCATGAGTCATCAACTTA  >  AC_000091/1397707‑1397841

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap:     Deleted base: