Read alignment evidence...
  seq id position ref new freq score (cons/poly) reads annotation genes product
*AC_0000913,676,7800AC35.0% 155.6 / 28.4 97intergenic (+111/‑88)yifO/ppiChypothetical protein/peptidyl‑prolyl cis‑trans isomerase C
Reads supporting (aligned to +/- strand):  ref base A (39/24);  new base C (0/34);  total (39/58)
Fisher's exact test for biased strand distribution p-value = 9.64e-11
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00
Rejected as consensus: Frequency below/above cutoff threshold.

Only 100 of 118 total aligned reads displayed.

TAATGACTTTGTAGCCCATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATCA  >  AC_000091/3676691‑3676868
                                                                                         |                                                                                        
  aTGACTTTGTAGCCCATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTAcc                                                                                        <  2:1328055/90‑1 (MQ=255)
   tGACTTTGTAGCCGATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCa                                                                                       >  2:3019124/1‑90 (MQ=255)
    gACTTTGTAGCCCATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAg                                                                                      <  2:865853/90‑1 (MQ=255)
    gACTTTGTAGCCCATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAg                                                                                      >  2:2888849/1‑90 (MQ=255)
     aCTTTGTAGCCCATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGc                                                                                     >  2:2649980/1‑90 (MQ=255)
     aCTTTGTAGCCCATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGc                                                                                     >  1:771387/1‑90 (MQ=255)
        ttGTAGCCCATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGGTTTTCCGGGCTTTTGCCATATATGTACCAGCCAc                                                                                  >  1:2728154/1‑90 (MQ=255)
        ttGTAGCCCATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCAc                                                                                  <  2:79002/90‑1 (MQ=255)
         tGTAGCCCATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACt                                                                                 <  1:3404367/90‑1 (MQ=255)
           tAGCCCATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTcc                                                                               >  2:819310/1‑90 (MQ=255)
           tAGCCCATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTcc                                                                               >  2:646102/1‑90 (MQ=255)
           tAGCCCATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAACCCCGGATTTTCCGGGCTTTTGCCATATATGTCCCAGCCACTcc                                                                               <  2:1491106/90‑1 (MQ=255)
            aGCCCATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTccc                                                                              >  1:2434441/1‑90 (MQ=255)
             gCCCATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCct                                                                             <  1:1560673/90‑1 (MQ=255)
             gCCCATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCct                                                                             >  2:3059759/1‑90 (MQ=255)
               ccATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCctga                                                                           <  1:2241401/90‑1 (MQ=255)
               ccATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCctga                                                                           >  1:767422/1‑90 (MQ=255)
               ccATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCctga                                                                           >  1:1183918/1‑90 (MQ=255)
                cATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCctgac                                                                          <  2:2414731/90‑1 (MQ=255)
                  tAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCctgactg                                                                        >  2:2376206/1‑90 (MQ=255)
                   agagGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCctgactga                                                                       <  1:1983151/90‑1 (MQ=255)
                    gagGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCtgactgac                                                                      >  1:139778/1‑90 (MQ=255)
                       gCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAAt                                                                   <  1:122669/90‑1 (MQ=255)
                       gCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAAt                                                                   >  1:124850/1‑90 (MQ=255)
                       gCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAAt                                                                   >  1:1325824/1‑90 (MQ=255)
                        cccTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAAtt                                                                  <  2:325788/90‑1 (MQ=255)
                         ccTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTa                                                                 >  1:2352850/1‑90 (MQ=255)
                         ccTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTa                                                                 >  2:547223/1‑90 (MQ=255)
                          cTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGGTTTTCCCGGCTTTTGCCCTATATGTACCAGCCACTCCCTGACTGACAATTAc                                                                >  1:300580/1‑90 (MQ=255)
                          cTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTAc                                                                >  2:3062325/1‑90 (MQ=255)
                          cTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTAc                                                                >  1:2803658/1‑90 (MQ=255)
                           tAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGGTTTTTCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACg                                                               >  1:240908/1‑90 (MQ=255)
                           tAAGTTTTCTCCCCTGGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACg                                                               <  1:2118806/90‑1 (MQ=255)
                             aGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGtt                                                             <  2:2977827/90‑1 (MQ=255)
                             aGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGtt                                                             <  1:3273742/90‑1 (MQ=255)
                               ttttCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGTTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAg                                                           <  2:3306626/90‑1 (MQ=255)
                               ttttCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAg                                                           >  2:2294928/1‑90 (MQ=255)
                               ttttCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAg                                                           <  1:795937/90‑1 (MQ=255)
                                  tctcCCCTTGGGGGACCGGGGAAGCCCGGATTTTCCGGTTTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCAt                                                        <  2:3031984/90‑1 (MQ=255)
                                  tctcCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGTTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCAt                                                        <  1:2710988/90‑1 (MQ=255)
                                     ccccTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTg                                                     <  2:1064589/90‑1 (MQ=255)
                                       ccTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCg                                                   <  1:1176756/90‑1 (MQ=255)
                                         ttGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGa                                                 <  1:1276972/90‑1 (MQ=255)
                                          tGAGGGACCTGCGAAGCCCGGTTTTTCCGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGAt                                                <  1:436809/90‑1 (MQ=255)
                                          tGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGAt                                                <  1:529467/90‑1 (MQ=255)
                                            aGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCa                                              <  1:1487552/90‑1 (MQ=255)
                                            aGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCa                                              >  1:2180993/1‑90 (MQ=255)
                                             gggACCTGCGAAGCCCGGATTTTCCGGGTTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCAt                                             <  2:3309940/90‑1 (MQ=255)
                                              ggACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATg                                            >  1:835462/1‑90 (MQ=255)
                                                 ccTGCAAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTa                                         <  2:2854559/90‑1 (MQ=255)
                                                  cggCGAAGCCGGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTaa                                        <  2:1698684/88‑1 (MQ=255)
                                                  cTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTaa                                        <  1:3095528/90‑1 (MQ=255)
                                                  cTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTaa                                        <  1:3364819/90‑1 (MQ=255)
                                                  cTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTaa                                        >  1:617554/1‑90 (MQ=255)
                                                  cTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTaa                                        <  1:1467800/90‑1 (MQ=255)
                                                    gCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTaaaa                                      <  2:42274/90‑1 (MQ=255)
                                                     cGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAAt                                     <  1:1414679/90‑1 (MQ=255)
                                                     cGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAAt                                     <  2:1850021/90‑1 (MQ=255)
                                                      gAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATc                                    <  2:1857839/90‑1 (MQ=255)
                                                       aaGCCCGTATTTTCCGATCTTTTCACAAATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATcg                                   <  2:311001/90‑1 (MQ=255)
                                                       aaGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATcg                                   <  1:1611203/90‑1 (MQ=255)
                                                        aGCCCGGATGTTCCGGGCTTTTGCCATATATGTACCCGCCACTCCCTGACTGACAATTACGATAGCATCTGCGGATCATGCTAAAATcgc                                  >  2:2621452/1‑90 (MQ=255)
                                                         gCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATcgcc                                 >  2:396130/1‑90 (MQ=255)
                                                          cccGGATTTTCCGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATcgccg                                <  2:245941/90‑1 (MQ=255)
                                                           ccGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATcgccgc                               <  1:2410275/90‑1 (MQ=255)
                                                           ccGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATcgccgc                               >  2:1941125/1‑90 (MQ=255)
                                                             ggtttttCCGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCt                             <  2:817392/87‑1 (MQ=255)
                                                               aTTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGa                           <  1:251088/90‑1 (MQ=255)
                                                                ttttCCGGGTTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGAc                          <  2:2664541/90‑1 (MQ=255)
                                                                ttttCCGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGAc                          <  1:3370959/90‑1 (MQ=255)
                                                                  ttCGGGTCTTTTGCAAGATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACaa                        <  1:1110918/90‑1 (MQ=255)
                                                                  ttCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACaa                        >  2:1736503/1‑90 (MQ=255)
                                                                   tCCGGTCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAat                       <  2:105583/90‑1 (MQ=255)
                                                                   ccggggTTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAat                       <  2:606422/87‑1 (MQ=255)
                                                                     cGGGCTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAatta                     <  2:301529/90‑1 (MQ=255)
                                                                      gggCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAattat                    >  2:3299457/1‑90 (MQ=255)
                                                                      gggCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAattat                    <  1:1594760/90‑1 (MQ=255)
                                                                      gggCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAattat                    >  2:3192464/1‑90 (MQ=255)
                                                                        gCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTc                  >  1:641404/1‑90 (MQ=255)
                                                                         cTTTTGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCa                 <  1:2989871/90‑1 (MQ=255)
                                                                         cTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCa                 >  2:1026996/1‑90 (MQ=255)
                                                                          ttttGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCAc                <  2:3324991/90‑1 (MQ=255)
                                                                           tttGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACt               <  1:2861925/90‑1 (MQ=255)
                                                                            ttGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTc              <  1:785912/90‑1 (MQ=255)
                                                                             tGCCATATATGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCa             <  2:1354925/90‑1 (MQ=255)
                                                                               ccATATATGCACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAg           <  2:1497408/90‑1 (MQ=255)
                                                                               aaatatatGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAg           <  1:74602/88‑1 (MQ=255)
                                                                                cATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAgg          >  2:38390/1‑90 (MQ=255)
                                                                                  tatatGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCa        <  1:3172226/90‑1 (MQ=255)
                                                                                  tatatGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCa        <  2:1875352/90‑1 (MQ=255)
                                                                                   atatGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCAc       <  2:1269069/90‑1 (MQ=255)
                                                                                   atatGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCAc       <  2:1745291/90‑1 (MQ=255)
                                                                                   atatGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCAc       <  1:2094739/90‑1 (MQ=255)
                                                                                   atatGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGATAAAATCGCCGCCTGACAATTATTCACTCAAGGCAc       <  1:1383353/90‑1 (MQ=255)
                                                                                   atatGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCAc       <  1:3440760/90‑1 (MQ=255)
                                                                                   atatGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCAc       >  1:1615792/1‑90 (MQ=255)
                                                                                     atttACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGa     <  2:1545673/87‑1 (MQ=255)
                                                                                      tGTCCCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGAt    <  1:1626070/90‑1 (MQ=255)
                                                                                        tACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATCa  >  2:2902613/1‑90 (MQ=255)
                                                                                        tACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATCa  >  2:804458/1‑90 (MQ=255)
                                                                                         |                                                                                        
TAATGACTTTGTAGCCCATAGAGGCCCTAAGTTTTCTCCCCTTGAGGGACCTGCGAAGCCCGGATTTTCCGGGCTTTTGCCATATATGTACCAGCCACTCCCTGACTGACAATTACGTTAGCATCTGCGGATCATGCTAAAATCGCCGCCTGACAATTATTCACTCAAGGCACGATCA  >  AC_000091/3676691‑3676868

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑