Missing coverage evidence...
			seq id	start	end	size	←reads	reads→	gene	description
*	*	÷	NZ_CP009273	1185809	1185815	7	2 [0]	[1] 2	phoP	two‑component system response regulator PhoP

TCTGCGTCATCGACCTGATGACCAGCATCCTGAATCTGAACTTTAAGGTGGTGACGTAACAACGCATTGTCTTCAACAACCAGTACGCGCATTTT  >  NZ_CP009273/1185812‑1185906     |                                                                                           tctGCGTCATCGACCTGATGACCAGCATCCTGAATCTGAACTTTAAGGTGGTGACGTAACAACGCATTGTCTTCAACAACCAGTACGCGCa      <  1:364842/91‑1 (MQ=255)     cGTCATCGACCTGATGACCAGCATCCTGAATCTGAACTTTAAGGTGGTGACGTAACAACGCATTGTCTTCAACAACCAGTACGCGCAtttt  >  2:327855/1‑91 (MQ=255)     |                                                                                           TCTGCGTCATCGACCTGATGACCAGCATCCTGAATCTGAACTTTAAGGTGGTGACGTAACAACGCATTGTCTTCAACAACCAGTACGCGCATTTT  >  NZ_CP009273/1185812‑1185906

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑