| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,240,108 | 0 | T | G | 56.2% | 2.1 / 14.0 | 16 | A47A (GCA→GCC) | cirA | catecholate siderophore receptor CirA |
| Reads supporting (aligned to +/- strand): ref base T (2/5); new base G (9/0); total (11/5) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 4.81e-03 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.25e-02 | |||||||||||
| Rejected as consensus: E-value score below prediction cutoff. | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
TCTTTGAGGACATCCTTCAGATTCTGTACCGGTTTTCGCTGCAGGTCTTCCTGGGTAATGACGCTGATACTGGCAGGTGCATCTTTAAGATTTTGTTCCACGGAAGATGCAGTGACAACCATCGTTTCGCCATCATCATCGACCGCTAACACAGGCCATGCA > NZ_CP009273/2240031‑2240192 | tcttTGAGGACATCCTTCAGATTCTGTACCGGTTTTCGCTGCAGGTCTTCCTGGGTAATGACGCTGATACTGGCAGGGGGATCTTTTAGAt > 2:337597/1‑91 (MQ=255) cATCCTTCAGATTCTGTACCGGTTTTCGCTGCAGGTCTTCCTGGGTAATGACGCTGATACTGGCAGGGGCCTCTTTTAGATTTTGTTTCAc > 2:472774/1‑91 (MQ=255) aGATTCTGTACCGGTTTTCGCTGCAGGTCTTCCTGGGTAATGACGCTGATACTGGCAGGTGCATCTTTAAGATTTTGTTCCACGGAAGATg < 1:340363/91‑1 (MQ=255) cTGTACCGGTTTTCGCTGCAGGTCTTCCTGGGTAATGACGCTGATACTGGCAGGTGc > 1:2794/1‑57 (MQ=255) cTGTACCGGTTTTCGCTGCAGGTCTTCCTGGGTAATGACGCTGATACTGGCAGGTGc < 2:2794/57‑1 (MQ=255) cTGTACCGGTTTTCGCTGCAGGTCTTCCTGGGTAATGACGCTGATACTGGCAGGGGGATCTTTAAGATTTTGTTTCACGGGAGATGCAGTg > 2:519389/1‑91 (MQ=255) gTACCGGTTTTCGCTGCAGGTCTTCCTGGGTAATGACGCTGATACTGGCAGGTGCATCTTTAAGATTTTGTTCCACGGAAGATGCAGTGAc < 1:472774/91‑1 (MQ=255) tttCGCTGCAGGTCTTCCTGGGTAATGACGCTGATACTGGCAGGGGCATCTTTAAGATTTTGTTCCACGGAAGATGCAGTGACAACCATCg > 1:526356/1‑91 (MQ=255) tCCTGGGTAATGACGCTGATACTGGCAGGGGCATCTTTAAGATTTTGTTCCACGGAAGATGCAGTGACAACCATCGTTTCGCcatcatcat > 1:372688/1‑91 (MQ=255) tCCTGGGTAATGACGCTGATACTGGCAGGGGCATCTTTAAGATTTTGTTCCACGGAAGATGCAGTGACAACCATCGTTTCGCcatcatcat > 1:373988/1‑91 (MQ=255) tAATGACGCTGATACTGGCAGGTGCATCTTTAAGATTTTGTTCCACGGAAGATGCAGTGACAACCATCGTTTCGCCATCATCATCGACCGc < 2:48476/91‑1 (MQ=255) aTGACGCTGATACTGGCAGGGGCATCTTTAAGATTTTGTTCCACGGAAGATGCAGTGACAACCATCGTTTCGCCATCATCATCGACCGCTa > 2:148008/1‑91 (MQ=255) gCTGATACTGGCAGGTGCATCTTTAAGATTTTGTTCCACGGAAGATGCAGTGACAACCATCGTTTCGCCATCATCATCGACCGCTAAcaca > 1:620731/1‑91 (MQ=255) gCTGATACTGGCAGGGGCATCTTTAAGATTTTGTTCCACGGAAGATGCAGTGACAACCATCGTTTCGCCATCATCATCGACCGCTAAcaca > 2:276063/1‑91 (MQ=255) ggCAGGTGCATCTTTAAGATTTTGTTCCACGGAAGATGCAGTGACAACCATCGTTTCGCCATCATCATCGACCGCTAACACAGGCCATGca < 2:447649/91‑1 (MQ=255) ggCAGGGGCATCTTTAAGATTTTTTTCCACGGAAGATGCAGTGACAACCATCGTTTCGCCATCATCATCGACCGCTAACACAGGCCATGca > 2:288454/1‑91 (MQ=255) ggCAGGGGCATCTTTAAGATTTTGTTCCACGGAAGATGCAGTGACAACCATCGTTTCGCCATCATCATCGACCGCTAACACAGGCCATGca > 1:289179/1‑91 (MQ=255) | TCTTTGAGGACATCCTTCAGATTCTGTACCGGTTTTCGCTGCAGGTCTTCCTGGGTAATGACGCTGATACTGGCAGGTGCATCTTTAAGATTTTGTTCCACGGAAGATGCAGTGACAACCATCGTTTCGCCATCATCATCGACCGCTAACACAGGCCATGCA > NZ_CP009273/2240031‑2240192 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |