New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	= 4161775	0 (0.000)	5 (0.180)	5/154	2.3	100%	intergenic (+93/‑210)	rrf/murB	5S ribosomal RNA/UDP‑N‑acetylmuramate dehydrogenase
	?	NZ_CP009273	= 4161780	NA (NA)					intergenic (+98/‑205)	rrf/murB	5S ribosomal RNA/UDP‑N‑acetylmuramate dehydrogenase

CAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGA  >  NZ_CP009273/4161685‑4161865                                                                                           |                                                                                           cAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGC                                                                                            >  1:542074‑M1/1‑91 (MQ=255)                gCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCtcccggcggatttgt                                                                             <  2:542454‑M1/91‑16 (MQ=255)                                                                    ctctCCTGAGTAGGACAAATCCGCtcccggcggatt                                                                                <  2:576238‑M1/36‑13 (MQ=255)                                                                    ctctCCTGAGTAGGACAAATCCGCtcccggcggatt                                                                                >  1:576238‑M1/1‑24 (MQ=255)                                                                       tcCTGAGTAGGACAAATCCGCtcccggcggatttgtgctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtct                      >  2:113331‑M1/1‑21 (MQ=255)                                                                                ggACAAATCCGCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactga             >  1:535381‑M1/1‑12 (MQ=255)                                                                                     aaTCCGCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctt        >  2:496748‑M1/1‑7 (MQ=255)                                                                                     aaTCCGCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctt        <  1:58397‑M1/91‑85 (MQ=255)                                                                                     aaTCCGCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcc                            >  1:368371‑M1/1‑7 (MQ=255)                                                                                     aaTCCGCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcc                            <  2:368371‑M1/71‑65 (MQ=255)                                                                                      aTCCGCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagccttt       <  2:514017‑M1/91‑86 (MQ=255)                                                                                        ccGCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggccca                          >  2:341748‑M1/1‑4 (MQ=255)                                                                                        ccGCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggccca                          <  1:341748‑M1/70‑67 (MQ=255)                                                                                          gCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccatactttccacttagcctttcgtt   >  2:214299‑M1/1‑2 (MQ=255)                                                                                          gCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgtt   >  2:542074‑M1/1‑2 (MQ=255)                                                                                          gCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgtt   >  2:667055‑M1/1‑2 (MQ=255)                                                                                          gCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgtt   >  1:839434‑M1/1‑2 (MQ=255)                                                                                          gCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgtt   >  1:612994‑M1/1‑2 (MQ=255)                                                                                          gCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgtt   >  1:558579‑M1/1‑2 (MQ=255)                                                                                          gCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgtt   >  1:274346‑M1/1‑2 (MQ=255)                                                                                          gCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgtt   >  1:27234‑M1/1‑2 (MQ=255)                                                                                          gCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgtt   >  1:267694‑M1/1‑2 (MQ=255)                                                                                          gCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggccca                          <  2:169361‑M1/68‑67 (MQ=255)                                                                                          gCtcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggccca                          >  1:169361‑M1/1‑2 (MQ=255)                                                                                           ctcccggcggatttgtcctactcaggagagcgttgaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttt  <  1:143989‑M1/91‑91 (MQ=255)                                                                                           ctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttt  <  2:470242‑M1/91‑91 (MQ=255)                                                                                           ctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttt  <  1:36425‑M1/91‑91 (MQ=255)                                                                                           ctcccggcggatttgtcctactcaggagagcgttcaccgacaaacaacagataaaacgaaaggcccagtctttcgactgagcctttcgttt  <  2:634632‑M1/91‑91 (MQ=255)                                                                                           |                                                                                           CAAATAAAACGAAAGGCTCAGTCGAAAGACTGGGCCTTTCGTTTTATCTGTTGTTTGTCGGTGAACGCTCTCCTGAGTAGGACAAATCCGCCGGGAGCGGATTTGAACGTTGCGAAGCAACGGCCCGGAGGGTGGCGGGCAGGACGCCCGCCATAAACTGCCAGGCATCAAATTAAGCAGA  >  NZ_CP009273/4161685‑4161865

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.