| New junction evidence | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | reads (cov) | reads (cov) | score | skew | freq | annotation | gene | product | ||
| * | ? | NZ_CP009273 | 3920778 = | 31 (1.000) | 6 (0.220) | 5/148 | 2.2 | 19.5% | coding (264/993 nt) | asnA | aspartate‑‑ammonia ligase |
| ? | NZ_CP009273 | 3920817 = | 23 (0.860) | coding (303/993 nt) | asnA | aspartate‑‑ammonia ligase | |||||
| Rejected: Frequency below/above cutoff threshold. | |||||||||||
TTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGGGCGACGGTGAGCGTC > NZ_CP009273/3920727‑3920899 | tcccacgggtcaacatagacggagtgcaacggagaaagacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccc < 1:177119‑M2/1‑1 (MQ=255) caCTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGa > 1:561738/1‑91 (MQ=255) tcaacatagaccgagtgcaacggagaaagacggtcttcatgggggcgaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGAc < 1:304490‑M2/10‑1 (MQ=255) tcaacatagaccgagtgcaacggagaaagacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGAc < 2:189780‑M2/10‑1 (MQ=255) tcaacatagaccgagtgcaacggagaaagacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGAc > 1:189780‑M2/82‑91 (MQ=255) aaGTGGAAACGCCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGAcc < 1:729662/91‑1 (MQ=255) gTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt < 1:611741/91‑1 (MQ=255) gagtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCg < 1:679518‑M1/61‑1 (MQ=255) cAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGt > 1:427291/1‑91 (MQ=255) agtgcaacggagaaagacggtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGt < 2:277382‑M1/62‑1 (MQ=255) gACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTg < 1:152743/91‑1 (MQ=255) cTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCAc < 2:284664/91‑1 (MQ=255) ttAGGGCCACCCGAGTTCAGCGCGGGCGAAGGGGTGTACACCCACAGGAAAGCCCTTCGCGCCGATGAAGACCGTCTTTCTCCGTTGCACt < 2:388610/91‑1 (MQ=255) ttAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACt < 2:187576/91‑1 (MQ=255) tgaGGGCAACACGCCTCAAGGCCGGGCGAAGGGCTTGACACCCACAGTAAAGCGCTTCCCCCCGATGAAGACCGTCTTTCTCCGTTGCACt < 2:4689/89‑1 (MQ=255) acggagaaagacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACt < 2:277382‑M2/29‑1 (MQ=255) tAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTc < 1:818961/91‑1 (MQ=255) cggagaaagacggtcttcatcggggcgaagggctttcatgtgcgtgtacagcccttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTc < 1:679518‑M2/30‑1 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTc < 2:427291/91‑1 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTc < 2:561738/91‑1 (MQ=255) gCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTc < 1:519146/91‑1 (MQ=255) acacGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTAt > 2:231183/1‑91 (MQ=255) cGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGtt < 1:86266/91‑1 (MQ=255) gACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTg < 1:816421/91‑1 (MQ=255) gtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa < 2:189780‑M1/81‑1 (MQ=255) gtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa > 1:189780‑M1/11‑91 (MQ=255) gtcttcatcgGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCCATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGa < 1:304490‑M1/81‑1 (MQ=255) gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt < 2:355931/54‑1 (MQ=255) gcgGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGt > 1:355931/1‑54 (MQ=255) gGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCCGTCTATGTTGACCCGTGGGa < 1:177119‑M1/90‑1 (MQ=255) ggggGAAAGGGTGTACACCCACATGAAAGACCTTCGCCCCCATGAAGACCGTCTTTCTCCGTTGCAATCGCTCTATGTTGAACAGCGGGAc > 2:590941/1‑91 (MQ=255) GGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGAc < 1:50554‑M1/91‑1 (MQ=255) GAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTggg > 1:539389‑M1/1‑91 (MQ=255) AAGGGCTGTACCCGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGa > 2:4708‑M1/1‑91 (MQ=255) cacGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATg < 2:102523/91‑1 (MQ=255) aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt > 2:427666/1‑64 (MQ=255) aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGt < 1:427666/64‑1 (MQ=255) aTGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGGGCGACg > 2:513642/1‑91 (MQ=255) cttcgcccCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGGGCGACGGTGAGCGTc > 1:443839‑M2/9‑91 (MQ=255) | TTCACTGGCGAAGTGGAAACGTCAGACCTTAGGGCAACACGACTTCAGCGCGGGCGAAGGGCTGTACACGCACATGAAAGCCCTTCGCCCCGATGAAGACCGTCTTTCTCCGTTGCACTCGGTCTATGTTGACCAGTGGGACTGGGAACGCGTAATGGGCGACGGTGAGCGTC > NZ_CP009273/3920727‑3920899 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |
| Reads not counted as support for junction |
| read_name Not counted due to insufficient overlap past the breakpoint. |
| read_name Not counted due to not crossing MOB target site duplication. |