| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,712,684 | T→C | intergenic (‑32/+66) | mliC ← / ← anmK | C‑type lysozyme inhibitor/anhydro‑N‑acetylmuramic acid kinase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,712,684 | 0 | T | C | 100.0% | 61.6 / NA | 18 | intergenic (‑32/+66) | mliC/anmK | C‑type lysozyme inhibitor/anhydro‑N‑acetylmuramic acid kinase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (8/10); total (8/10) | |||||||||||
GCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAAT > NZ_CP009273/1712596‑1712770 | gcTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAacac > 2:415150/1‑91 (MQ=255)gcTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAacac > 1:705307/1‑91 (MQ=255) tACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAACACGc < 1:312957/91‑1 (MQ=255) tACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAACACGc < 2:334445/91‑1 (MQ=255) tACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAACACGc < 1:774098/91‑1 (MQ=255) aCAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAACACGcc < 2:204287/91‑1 (MQ=255) cAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAACACGccc < 1:857674/91‑1 (MQ=255) aGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAACACGCCCTCCCTAACGTTc > 1:860280/1‑91 (MQ=255) aaTTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAACACGCCCTCCCTAACGTTCCAAGTGTATCGGCAGAc < 2:860280/91‑1 (MQ=255) aaTTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAACACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGAc < 1:208334/91‑1 (MQ=255) aaTTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAACACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGAc < 2:325441/91‑1 (MQ=255) aaTTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAACACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGAc < 2:481641/91‑1 (MQ=255) ttCATACCCAGAAGACTTCCCTGGTCGGGAGGGCAACACGCCCTCCATA‑‑GCACCAAGTGTAACGGCAGACGCCGTAAGAAAAATTCACTTa < 1:822799/90‑1 (MQ=255) gAAGACTTTCCTGGTCTGGAGGGCAACACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGat > 2:172822/1‑91 (MQ=255) ttCCTGGTCTGGAGGGCAACACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACgg > 1:459001/1‑91 (MQ=255) ttCCTGGTCTGGAGGGCAACACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACgg > 2:391816/1‑91 (MQ=255) ggTCTGGAGGGCAACACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAg < 2:699494/91‑1 (MQ=255) ggAGGGCAACACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCgggg > 2:848340/1‑91 (MQ=255) gCAACACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGTCGCGGAAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAAt > 2:671932/1‑91 (MQ=255) gCAACACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAAt > 1:330261/1‑91 (MQ=255) gCAACACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAAt > 2:75261/1‑91 (MQ=255) | GCTACAGCCGGAGAGAAGGACCGGCAAAATGATAATTAACAGTTTTTTCATAGTCATATCCCGAAGACTTTCCTGGTCTGGAGGGCAATACGCCCTCCCTAACGTTCCAAGTGTAACGGCAGACGCGGTAAGAAAAATTCAGTTAACTCTGATATCACGGGTTAGCGGGGAAAAT > NZ_CP009273/1712596‑1712770 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 21 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |