| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,179,484 | A→G | E30G (GAA→GGA) | rcnA → | nickel/cobalt efflux protein RcnA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,179,484 | 0 | A | G | 100.0% | 91.6 / NA | 25 | E30G (GAA→GGA) | rcnA | nickel/cobalt efflux protein RcnA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (12/13); total (12/13) | |||||||||||
TGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGAACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGC > NZ_CP009273/2179397‑2179568 | tGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGAcc < 1:415602/91‑1 (MQ=255) gACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCa > 2:503049/1‑91 (MQ=255) gACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCa > 1:724030/1‑91 (MQ=255) gACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCa > 2:272229/1‑91 (MQ=255) gAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGc < 1:23539/91‑1 (MQ=255) aTTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCAc < 1:272229/91‑1 (MQ=255) aaGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATggcggc > 2:138688/1‑91 (MQ=255) aGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGgcggcg > 2:709331/1‑91 (MQ=255) ccTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTatcat < 1:456469/91‑1 (MQ=255) cTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTatcatc < 1:657768/91‑1 (MQ=255) ggTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGc < 2:455990/91‑1 (MQ=255) ggTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGc < 1:503049/91‑1 (MQ=255) ccccAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGc < 1:765389/91‑1 (MQ=255) ccccAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGc < 1:138688/91‑1 (MQ=255) ccccAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGc < 1:252937/91‑1 (MQ=255) cAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCAcc > 2:569415/1‑91 (MQ=255) gcgcCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGc > 1:86423/1‑42 (MQ=255) gcgcCATCTTACTTGGTGCGCTTCATGGCCTGGGACCAGGGc < 2:86423/42‑1 (MQ=255) tGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTg > 2:356985/1‑91 (MQ=255) tGGTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTg < 2:856348/91‑1 (MQ=255) ggTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGa < 2:273020/91‑1 (MQ=255) gTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGAt > 1:828749/1‑91 (MQ=255) gTGCGCTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGAt > 1:265689/1‑91 (MQ=255) gcTTCATGGCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTc > 1:218570/1‑91 (MQ=255) gCCTGGGACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGgc > 2:673425/1‑91 (MQ=255) | TGACCGAATTTACAACTCTTCTTCAGCAAGGAAACGCCTGGTTCTTCATCCCCAGCGCCATCTTACTTGGTGCGCTTCATGGCCTGGAACCAGGGCACTCAAAAACGATGATGGCGGCGTTTATCATCGCCATCAAAGGCACCATTAAACAAGCGGTGATGCTCGGACTGGC > NZ_CP009273/2179397‑2179568 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |