| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,287,796 | C→T | L196L (CTG→CTA) | ccmF ← | cytochrome c‑type biogenesis heme lyase CcmF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,287,796 | 0 | C | T | 100.0% | 65.1 / NA | 18 | L196L (CTG→CTA) | ccmF | cytochrome c‑type biogenesis heme lyase CcmF |
| Reads supporting (aligned to +/- strand): ref base C (0/0); new base T (10/8); total (10/8) | |||||||||||
ATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTCAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCGG > NZ_CP009273/2287716‑2287882 | aTGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAaagaag > 2:623833/1‑91 (MQ=255) ccGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCaa < 1:856357/91‑1 (MQ=255) aTCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACg > 2:283238/1‑91 (MQ=255) gCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCg > 2:235388/1‑91 (MQ=255) gCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCg > 2:79014/1‑91 (MQ=255) tGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCgag < 2:678671/91‑1 (MQ=255) ccAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAATCATTGGCAAAAGCAAACGCCACCGAGaa < 2:701317/91‑1 (MQ=255) ccACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACg < 1:562886/91‑1 (MQ=255) gACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTAccc < 1:807742/91‑1 (MQ=255) gACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTAccc > 2:629413/1‑91 (MQ=255) gAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCat > 2:848227/1‑91 (MQ=255) gcgcATAAGTGCTGTCCAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCag > 2:656867/1‑91 (MQ=255) gcATAAGTGCTGTCCAGACGCCCGCTTAGCAGAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCagag > 1:803190/1‑91 (MQ=255) cAGACGCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATc < 1:286228/91‑1 (MQ=255) gCCCGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGccc < 1:235388/91‑1 (MQ=255) ccGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCg > 2:780246/1‑91 (MQ=255) ccGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCg > 2:97646/1‑91 (MQ=255) cGCTTAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCgg < 1:107273/91‑1 (MQ=255) | ATGCCGAGCGTCAGGAAGATCCACGCTGCCAGCGTCCACGGACGAGTAAAACGCGCATAAGTGCTGTCCAGACGCCCGCTCAGCAAAGAAGCAATGGCAAAAGCAAACGCCACCGAGAAACCCACGTACCCCATATAAAGCAGAGGCGGATGGAAGATCAGCCCCGG > NZ_CP009273/2287716‑2287882 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |