| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,438,026 | T→C | K69E (AAA→GAA) | epmC ← | elongation factor P hydroxylase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,438,026 | 0 | T | C | 100.0% | 78.6 / NA | 23 | K69E (AAA→GAA) | epmC | elongation factor P hydroxylase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (8/15); total (8/15) | |||||||||||
CAACATCTTCAAACTGGCTTTGCGTTTGGGCATCGCGTCCGTCCGGGCAATACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTTCCCGGCAATACACCAGTGCGAAATCTCATGAATTGCGCTGGCATAAAAGCCATGAGCAAAGACGATTCGGTTATACGGTACTTCC > NZ_CP009273/2437939‑2438111 | caACATCTTCAAACTGGCTTTGCGTTTGGGCATCGCGTCCGTCCGGGCAATACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTcccc < 1:455239/91‑1 (MQ=255)caACATCTTCAAACTGGCTTTGCGTTTGGGCATCGCGTCCGTCCGGGCAATACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTcccc < 2:273338/91‑1 (MQ=255) aaCATCTTCAAACTGGCTTTGCGTTTGGGCATCGCGTCCGTCCGGGCAATACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTCCCCg < 2:227061/91‑1 (MQ=255) aaCATCTTCAAACTGGCTTTGCGTTTGGGCATCGCGTCCGTCCGGGCAATACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTCCCCg < 2:272388/91‑1 (MQ=255) aaCTGGCTTTGCGTTTGGGCATCGCGTCCGTCCGGGCAATACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTCCCCGGCAATACAcc < 2:501996/91‑1 (MQ=255) ggCTTTGCGTTTGGGCATCGCGTCCGTCCGGGCAATACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTCCCCg < 2:617493/77‑1 (MQ=255) ggCTTTGCGTTTGGGCATCGCGTCCGTCCGGGCAATACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTCCCCg > 1:617493/1‑77 (MQ=255) ggCTTTGCGTTTGGGCATCGCGTCCGTCCGGGCAATACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTCCCCGGCAATACACCAGTg > 2:500250/1‑91 (MQ=255) tttGCGTTTGGGCATCGCGTCCGTCCGGGCAATACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTCCCCGGCAATACACCAGTGCGa < 1:70474/91‑1 (MQ=255) ttGGGCATCGCGTCCGTCCGGGCAATACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTCCCCGGCAATACACCAGTGCGAAATCTCa < 2:447850/91‑1 (MQ=255) aTCGCGTCCGTCCGGGCAATACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTCCCCGGCAATACACCAGTGCGAAATCTCATGAAtt > 2:483422/1‑91 (MQ=255) gcgTCCGTCCGGGCAATACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTcccc > 1:24619/1‑57 (MQ=255) gcgTCCGTCCGGGCAATACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTcccc < 2:24619/57‑1 (MQ=255) ggCAATACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTCCCCGGCAATACACCAGTGCGAAATCTCATGAATTGCGCTGGCATaaaa > 2:234555/1‑91 (MQ=255) aTACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTCCCCGGCAATACACCAGTGCGAAATCTCATGAATTGCGCTGGCATAAAAGCCa < 2:88249/91‑1 (MQ=255) aTACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTCCCCGGCAATACACCAGTGCGAAATCTCATGAATTGCGCTGGCATAAAAGCCa < 1:29390/91‑1 (MQ=255) tACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTCCCCGGCAATACACCAGTGCGAAATCTCATGAATTGCGCTGGCATAAAAGCCAt < 2:537610/91‑1 (MQ=255) tACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTCCCCGGCAATACACCAGTGCGAAATCTCATGAATTGCGCTGGCATAAAAGCCAt < 2:716886/91‑1 (MQ=255) tACCAGTAGCCGAAAGCAACCAGCTCACGGCGCGCTTCCCCGGCAATACACCAGTGCGAAAGCTCATGAATTGCGCTGGCATAAAAGCCAt < 2:285469/91‑1 (MQ=255) gTAGCCGAAATCAACCAGCTCACGGCGCGCTTCCCCGGCAATACACCAGTGCGAAATCTCATGAATTGCGCTGGCATAAAAGCCATGAGCa > 2:383928/1‑91 (MQ=255) gTAGCCGAAATCAACCAGCTCACGGCGCGCTTCCCCGGCAATACACCAGTGCGAAATCTCATGAATTGCGCTGGCATAAAAGCCATGAGCa > 2:39827/1‑91 (MQ=255) aaTCAACCAGCTCACGGCGCGCTTCCCCGGCAATACACCAGTGCGAAATCTCATGAATTGCGCTGGCATAAAAGCCATGAGCAAAGACGAt < 1:551364/91‑1 (MQ=255) tCAACCAGCTCACGGCGCGCTTCCCCGGCAATACACCAGTGCGAAATCTCATGAATTGCGCTGGCATAAAAGCCATGAGCAAAGACGATTc < 2:489196/91‑1 (MQ=255) aGCTCACGGCGCGCTTCCCCGGCAATACACCAGTGCGAAATCTCATGAATTGCGCTGGCATAAAAGCCATGAGCAAAGACGATTCGGTtat < 2:841689/91‑1 (MQ=255) cGGCGCGCTTCCCCGGCAATACACCAGTGCGAAATCTCATGAATTGCGCTGGCATAAAAGCCATGAGCAAAGACGATTCGGTTATACGGTa > 1:292276/1‑91 (MQ=255) cgcTTCCCCGGCAATACACCAGTGCGAAATCTCATGAATTGCGCTg > 2:107242/1‑46 (MQ=255) cgcTTCCCCGGCAATACACCAGTGCGAAATCTCATGAATTGCGCTg < 1:107242/46‑1 (MQ=255) cgcTTCCCCGGCAATACACCAGTGCGAAATCTCATGAATTGCGCTGGCATAAAAGCCATGAGCAAAGACGATTCGGTTATACGGTACTTcc > 1:186901/1‑91 (MQ=255) | CAACATCTTCAAACTGGCTTTGCGTTTGGGCATCGCGTCCGTCCGGGCAATACCAGTAGCCGAAATCAACCAGCTCACGGCGCGCTTTCCCGGCAATACACCAGTGCGAAATCTCATGAATTGCGCTGGCATAAAAGCCATGAGCAAAGACGATTCGGTTATACGGTACTTCC > NZ_CP009273/2437939‑2438111 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |