| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,581,070 | G→A | A39A (GCG→GCA) | acrD → | multidrug efflux RND transporter permease AcrD |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,581,070 | 0 | G | A | 100.0% | 80.3 / NA | 23 | A39A (GCG→GCA) | acrD | multidrug efflux RND transporter permease AcrD |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (12/11); total (12/11) | |||||||||||
TGCCTGGGTGCTGGCAATCCTGTTGTGTCTGACAGGTACCCTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCGCCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGAGC > NZ_CP009273/2580986‑2581152 | tGCCTGGGTGCTGGCAATCCTGTTGTGTCTGACAGGTACCCTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCACCACCg < 2:268674/91‑1 (MQ=255) ccTGGGTGCTGGCAATCCTGTTGTGTCTGACAGGTACCCTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCACCACCGaa < 2:630730/91‑1 (MQ=255) tCCTGTTGTGTCTGACAGGTACCCTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCACCACCGAATGTGCGAGTg < 1:47264/86‑1 (MQ=255) tCCTGTTGTGTCTGACAGGTACCCTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCACCACCGAATGTGCGAGTg > 2:47264/1‑86 (MQ=255) cTGTTGTGTCTGACAGGTACCCTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCACCACCGAATGTGCGAGTGACCGCTa > 2:176278/1‑91 (MQ=255) gtCTGACAGGTACCCTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCACCACCGAATGTGCGAGTGACCGCTAACTATcc > 1:609803/1‑91 (MQ=255) tGACAGGTACCCTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCACCACCGAATGTGCGAGTGACCGCTAACTATCCCgg < 1:719201/91‑1 (MQ=255) aCAGGTACCCTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCACCACCGAATGTGCGAGTGACCGCTAACTATCCCGgcg > 1:783964/1‑91 (MQ=255) tACCCTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCACCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCg > 2:640367/1‑91 (MQ=255) cTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCACCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGccc > 2:636418/1‑91 (MQ=255) ggCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCACCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAg < 1:759305/91‑1 (MQ=255) gATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCACCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACg > 2:554676/1‑91 (MQ=255) gCCCGTTGAACAATACCCCGATCTCGCACCACCGAATGTGCGAGTg < 1:266275/46‑1 (MQ=255) gCCCGTTGAACAATACCCCGATCTCGCACCACCGAATGTGCGAGTg > 2:266275/1‑46 (MQ=255) cccGTTGAACAATACCCCGATCTCGCACCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCg < 1:540257/91‑1 (MQ=255) cccGTTGAACAATACCCCGATCTCGCACCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCg < 1:267478/91‑1 (MQ=255) tGAACAATGCCCCGATCTCGCACCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGAcc < 1:864804/91‑1 (MQ=255) ccccGATCTCGCACCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATc < 1:62478/91‑1 (MQ=255) ccGATCTCGCACCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGa > 2:231344/1‑91 (MQ=255) ccGATCTCGCACCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGa > 1:53460/1‑91 (MQ=255) ccGATCTCGCACCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGa > 1:346447/1‑91 (MQ=255) cGATCTCGCACCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGAg > 1:108935/1‑91 (MQ=255) gATCTCGCACCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGAGc < 2:782023/91‑1 (MQ=255) | TGCCTGGGTGCTGGCAATCCTGTTGTGTCTGACAGGTACCCTGGCGATTTTTTCATTGCCCGTTGAACAATACCCCGATCTCGCGCCACCGAATGTGCGAGTGACCGCTAACTATCCCGGCGCATCGGCCCAGACGCTGGAAAACACCGTGACCCAGGTTATCGAGC > NZ_CP009273/2580986‑2581152 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 27 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |