| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,745,770 | A→G | E206G (GAG→GGG) | recN → | DNA repair protein RecN |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,745,770 | 0 | A | G | 96.0% | 87.4 / NA | 25 | E206G (GAG→GGG) | recN | DNA repair protein RecN |
| Reads supporting (aligned to +/- strand): ref base A (0/0); major base G (13/11); minor base C (1/0); total (14/11) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
TTAAGTCAGGAACGCGCCGCCCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAAT > NZ_CP009273/2745688‑2745854 | ttAAGTCAGGAACGCGCCGCCCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGGGTTTGAAc < 1:429418/91‑1 (MQ=255) aaGTCAGGAACGCGCCGCCCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGGGTTTGAACaa > 1:271918/1‑91 (MQ=255) cAGGAACGCGCCGCCCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGGGTTTGAACAAATcg > 1:443797/1‑91 (MQ=255) aaCGCGCCGCCCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGGGTTTGAACAAATcgacga < 1:498175/91‑1 (MQ=255) cgcgCCGCCCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAag < 1:602212/91‑1 (MQ=255) cgcgCCGCCCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAag < 2:646400/91‑1 (MQ=255) gcgcCGCCCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAaga < 1:421667/91‑1 (MQ=255) gcgcCGCCCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAaga > 2:575656/1‑91 (MQ=255) gTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGCAGCGTTTGAACAACTCGACGAAGAGTACAAACg > 2:572247/1‑91 (MQ=255) gctgcAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAag > 2:738619/1‑71 (MQ=255) gctgcAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAag < 1:738619/71‑1 (MQ=255) aaTACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCgg > 1:241361/1‑91 (MQ=255) aaTTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAAtt > 2:682950/1‑91 (MQ=255) aaTTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAAtt > 1:837320/1‑91 (MQ=255) aaTTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAAtt > 2:55233/1‑91 (MQ=255) cTTAACGAATTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGAccacca > 1:790081/1‑91 (MQ=255) tAACGAATTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGc < 1:673950/70‑1 (MQ=255) tAACGAATTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGc > 2:673950/1‑70 (MQ=255) aaTTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGaa < 1:663241/91‑1 (MQ=255) aaTTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGaa < 1:55233/91‑1 (MQ=255) aaTTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGaa < 1:347787/91‑1 (MQ=255) aaTTTAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGaa > 2:823127/1‑91 (MQ=255) ttAATCCGCAGCCCGGAGGGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGc > 2:146332/1‑91 (MQ=255) aaTCCGCAGCCCGGAGGGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCAt < 2:51374/91‑1 (MQ=255) ccGGAGGGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAAt > 2:84889/1‑91 (MQ=255) | TTAAGTCAGGAACGCGCCGCCCGTGCGGAACTGCTGCAATACCAATTAAAAGAACTTAACGAATTTAATCCGCAGCCCGGAGAGTTTGAACAAATCGACGAAGAGTACAAACGTCTGGCGAACAGCGGTCAATTGCTGACCACCAGCCAGAATGCATTGGCATTAAT > NZ_CP009273/2745688‑2745854 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 24 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |