| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,829,895 | A→G | V297A (GTC→GCC) | hypF ← | carbamoyltransferase HypF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,829,895 | 0 | A | G | 100.0% | 69.9 / NA | 19 | V297A (GTC→GCC) | hypF | carbamoyltransferase HypF |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (5/14); total (5/14) | |||||||||||
CTCAGGTTGCCGGAGGTCATCACCAGCGGGCATTGCAGTTCCTGTAACAGCAAATGCTGGAGCGGGTTCGCAGGCAACATTACCCCGACTTCGTTAAGGTCAGGGGCGATATCATCACAAAGCTCAGGAACGTATTTTTTATCCACCAGCACAATCGGCGCGGCGGGCG > NZ_CP009273/2829808‑2829976 | cTCAGGTTGCCGGAGGTCATCACCAGCGGGCATTGCAGTTCCTGTAACAGCAAATGCTGGAGCGGGTTCGCAGGCAACATTACCCCGGCtt < 1:179563/91‑1 (MQ=255) gTTGCCGGAGGTCATCACCAGCGGGCATTGCAGTTCCTGTAACAGCAAATGCTGGAGCGGGTTCGCAGGCAACATTACCCCGGCTTCGTTa < 1:173055/91‑1 (MQ=255) gTTGCCGGAGGTCATCACCAGCGGGCATTGCAGTTCCTGTAACAGCAAATGCTGGAGCGGGTTCGCAGGCAACATTACCCCGGCTTCGTTa < 2:313781/91‑1 (MQ=255) ttGCCGGAGGTCATCACCAGCGGGCATTGCAGTTCCTGTAACAGCAAATGCTGGAGCGGGTTCGCAGGCAACATTACCCCGGCTTCGTTaa < 2:413037/91‑1 (MQ=255) cGGAGGTCATCACCAGCGGGCATTGCAGTTCCTGTAACAGCAAATGCTGGAGCGGGTTCGCAGGCAACATTACCCCGGCTTCGTTAAGGTc < 1:511349/91‑1 (MQ=255) ccAGCGGGCATTGCAGTTCCTGTAACAGCAAATGCTGGAGCGGGTTCGCAGGCAACATTACCCCGGCTTCGTTAAGGTCAGGGGCGATatc < 1:800366/91‑1 (MQ=255) gCATTGCAGTTCCTGTAACAGCAAATGCTGGAGCGGGTTCGCAGGCACCATTGCCCCGGCTTCGTTAAGGTCAGGGGCGATATCATCACaa < 2:74581/91‑1 (MQ=255) gCATTGCAGTTCCTGTAACAGCAAATGCTGGAGCGGGTTCGCAGGCAACATTACCCCGGCTTCGTTAAGGTCAGGGGCGATATCATCACaa < 1:852502/91‑1 (MQ=255) gCATTGCAGTTCCTGTAACAGCAAATGCTGGAGCGGGTTCGCAGGCAACATTACCCCGGCTTCGTTAAGGTCAGGGGCGATATCATCACaa < 2:615094/91‑1 (MQ=255) gCATTGCAGTTCCTGTAACAGCAAATGCTGGAGCGGGTTCGCAGGCAACATTACCCCGGCTTCGTTAAGGTCAGGGGCGATATCATCACaa > 2:617514/1‑91 (MQ=255) gCAGTGCAGGTCCGGTAACAGCAAAGGCTGGAGCGGGTTCGCAGGCAACATTACCCCGGCTTCGTTAAGGTCAGGGGCGATATCATCACaa < 1:450709/91‑1 (MQ=255) gTTCCTGTAACAGCAAATGCTGGAGCGGGTTCGCAGGCAACATTACCCCGGCTTTGTTAAGGTCAGGGGCGATATCATCACAAAGCTCAgg < 2:605452/91‑1 (MQ=255) ttCCTGTAACAGCAAATGCTGGAGCGGGTTCGCAGGCAACATTACCCCGGCTTCGTTAAGGTCAGGGGCGATatc > 1:523657/1‑75 (MQ=255) ttCCTGTAACAGCAAATGCTGGAGCGGGTTCGCAGGCAACATTACCCCGGCTTCGTTAAGGTCAGGGGCGATatc < 2:523657/75‑1 (MQ=255) cAAATGCTGGAGCGGGTTCGCAGGCAACATTACCCCGGCTTCGTTAAGGTCAGGGGCGATATCATCACAAAGCTCAGGAACGTATTTTTTa > 2:531956/1‑91 (MQ=255) aaaTGCTGGAGCGGGTTCGCAGGCAACATTACCCCGGCTTCGTTAAGGTCAGGGGCGATATCATCACAAAGCTCAGGAACGTATTTTTTAt > 1:554023/1‑91 (MQ=255) aaaTGCTGGAGCGGGTTCGCAGGCAACATTACCCCGGCTTCGTTAAGGTCAGGGGCGATATCATCACAAAGCTCAGGAACGTATTTTTTAt < 1:531956/91‑1 (MQ=255) gggTTCGCAGGCAACATTACCCCGGCTTCGTTAAGGTCAGGGGCGATATCATCACAAAGCTCAGGAACGTATTTTTTATCCACCAGCACaa > 2:289994/1‑91 (MQ=255) aTTACCCCGGCTTCGTTAAGGTCAGGGGCGATATCATCACAAAGCTCAGGAACGTATTTTTTATCCACCAGCACAATCGGCGCggcgggcg < 2:493313/91‑1 (MQ=255) | CTCAGGTTGCCGGAGGTCATCACCAGCGGGCATTGCAGTTCCTGTAACAGCAAATGCTGGAGCGGGTTCGCAGGCAACATTACCCCGACTTCGTTAAGGTCAGGGGCGATATCATCACAAAGCTCAGGAACGTATTTTTTATCCACCAGCACAATCGGCGCGGCGGGCG > NZ_CP009273/2829808‑2829976 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |