| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,589,221 | A→G | G181G (GGT→GGC) | livH ← | high‑affinity branched‑chain amino acid ABC transporter permease LivH |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,589,221 | 0 | A | G | 100.0% | 79.7 / NA | 22 | G181G (GGT→GGC) | livH | high‑affinity branched‑chain amino acid ABC transporter permease LivH |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (8/14); total (8/14) | |||||||||||
CACAAAGGTCAGCGCAATCACCCGGTCGGTGTTAATGCCAAGCAGACTCGCCATTTTCAGATCTTCCGCGCAGGCACGACACGCGCGACCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGT > NZ_CP009273/3589134‑3589301 | cacaAAGGTCAGCGCAATCACCCGGTCGGTGTTAATGCCAAGCAGACTCGCCATTTTCAGATCTTCCGCGCAGGCACGACACGCGCGGccc < 1:159724/91‑1 (MQ=255) aaGGTCAGCGCAATCACCCGGTCGGTGTTAATGCCAAGCAGACTCGCCATTTTCAGATCTTCCGCGCAGGCACGACACGCGCGGCCCATGc < 2:562926/91‑1 (MQ=255) aTCACCCGGTCGGTGTTAATGCCAAGCAGACTCGCCATTTTCAGATCTTCCGCGCAGGCACGACACGCGCGGCCCATGCGGGAATAGCGaa > 1:17879/1‑91 (MQ=255) aTCACCCGGTCGGTGTTAATGCCAAGCAGACTCGCCATTTTCAGATCTTCCGCGCAGGCACGACACGCGCGGCCCATGCGGGAATAGCGaa > 1:429340/1‑91 (MQ=255) aTCACCCGGTCGGTGTTAATGCCAAGCAGACTCGCCATTTTCAGATCTTCCGCGCAGGCACGACACGCGCGGCCCATGCGGGAATAGCGaa > 1:132728/1‑91 (MQ=255) tCACCCGGTCGGTGTTAATGCCAAGCAGACTCGCCATTTTCAGATCTTCCGCGCAGGCACGACACGCGCGGCCCATGCGGGAATAGCGAAt > 2:20945/1‑91 (MQ=255) ggtGTTAATGCCAAGCAGACTCGCCATTTTCAGATCTTCCGCGCAGGCACGACACGCGCGGCCCATGCGGGAATAGCGAATGAAAATCGTc > 2:432380/1‑91 (MQ=255) gtgtTAATGCCAAGCAGACTCGCCATTTTCAGATCTTCCGCGCAGGCACGACACGCGCGGCCCATGCGGGAATAGCGAATGAAAATCGTCa < 1:321677/91‑1 (MQ=255) gtgtTAATGCCAAGCAGACTCGCCATTTTCAGATCTTCCGCGCAGGCACGACACGCGCGGCCCATGCGGGAATAGCGAATGAAAATCGTCa > 1:607448/1‑91 (MQ=255) cAAGCAGACTCGCCATTTTCAGATCTTCCGCGCAGGCACGACACGCGCGGccc > 2:379671/1‑53 (MQ=255) cAAGCAGACTCGCCATTTTCAGATCTTCCGCGCAGGCACGACACGCGCGGccc < 1:379671/53‑1 (MQ=255) ttttCAGATCTTCCGCGCAGGCACGACACGCGCGGCCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAAc < 2:578718/91‑1 (MQ=255) ttttCAGATCTTCCGCGCAGGCACGACACGCGCGGCCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAAc < 1:488222/91‑1 (MQ=255) tCCGCGCAGGCACGACACGCGCGGCCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCa < 2:29770/91‑1 (MQ=255) gCACGACACGCGCGGCCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCa < 2:103032/91‑1 (MQ=255) aCGACACGCGCGGCCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGATGGTAACAATCCAGATCACCGCCTGCAtg < 2:607448/91‑1 (MQ=255) aCGACACGCGCGGCCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCAtg < 2:726163/91‑1 (MQ=255) aCGACACGCGCGGCCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCAtg > 2:348221/1‑91 (MQ=255) aCGACACGCGCGGCCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCAtg < 1:598047/91‑1 (MQ=255) aCGACACGCGCGGCCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCAtg < 1:436481/91‑1 (MQ=255) cGACACGCGCGGCCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCAtgg < 2:271015/91‑1 (MQ=255) gACACGCGCGGCCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCAtggt < 2:163924/91‑1 (MQ=255) | CACAAAGGTCAGCGCAATCACCCGGTCGGTGTTAATGCCAAGCAGACTCGCCATTTTCAGATCTTCCGCGCAGGCACGACACGCGCGACCCATGCGGGAATAGCGAATGAAAATCGTCAGCGCCAGCATGGCGAGGAAGGTAACAATCCAGATCACCGCCTGCATGGT > NZ_CP009273/3589134‑3589301 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |