| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,873,583 | A→G | S333S (AGT→AGC) | recF ← | DNA replication/repair protein RecF |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,873,583 | 0 | A | G | 100.0% | 63.7 / NA | 18 | S333S (AGT→AGC) | recF | DNA replication/repair protein RecF |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (12/6); total (12/6) | |||||||||||
ATACTTGGGTTAATCCGTTATTTTACCCTTTTCCACGGTAAACATCTTCGAATTTTCGTCCGACATGTCTATAACGTGTTCAGCACTGATCGCGCTGACAAAGACCTGTGATTGCGTCGCTTTTAAGCGGCTGGCAAGCAGCCCGCGACGCTCATCATCAAGCTCAGA > NZ_CP009273/3873499‑3873666 | ataCTTGGGTTAATCCGTTATTTTACCCTTTTCCACGGTAAACATCTTCGAATTTTCGTCCGACATGTCTATAACGTGTTCAGCGCTGATc < 2:611558/91‑1 (MQ=255) tGGGTTAATCCGTTATTTTACCCTTTTCCACGGTAAACATCTTCGAATTTTCGTCCGACATGTCTATAACGTGTTCAGCGCTGATCGCGCt > 2:668252/1‑91 (MQ=255) tGGGTTAATCCGTTATTTTACCCTTTTCCACGGTAAACATCTTCGAATTTTCGTCCGACATGTCTATAACGTGTTCAGCGCTGATCGCGCt < 2:623174/91‑1 (MQ=255) tGGGTTAATCCGTTATTTTACCCTTTTCCACGGTAAACATCTTCGAATTTTCGTCCGACATGTCTATAACGTGTTCAGCGCTGATCGCGCt > 2:367603/1‑91 (MQ=255) tGGGTTAATCCGTTATTTTACCCTTTTCCACGGTAAACATCTTCGAATTTTCGTCCGACATGTCTATAACGTGTTCAGCGCTGATCGCGCt < 2:49619/91‑1 (MQ=255) tGGGTTAATCCGTTATTTTACCCTTTTCCACGGTAAACATCTTCGAATTTTCGTCCGACATGTCTATAACGTGTTCAGCGCTGATCGCGCt > 2:588514/1‑91 (MQ=255) tAATCCGTTATTTTACCCTTTTCCACGGTAAACATCTTCGAATTTTCGTCCGACATGTCTATAACGTGTTCAGCGCTGATCGCGCTGACaa < 2:222140/91‑1 (MQ=255) ttATTTTACCCTTTTCCACGGTAAACATCTTCGAATTTTCGTCCGACATGTCTATAACGTGTTCAGCGCTGATCGCGCTGACAAAGACCtg > 1:771978/1‑91 (MQ=255) cTTTTCCACGGTAAACATCTTCGAATTTTCGTCCGACATGTCTATAACGTGTTCAGCGCTGATCGCGCTGACAAAGACCTGTGATTGCGTc < 2:124781/91‑1 (MQ=255) tttCCACGGTAAACATCTTCGAATTTTCGTCCGACATGTCTATAACGTGTTCAGCGCTGATCGCGCTGACAAAGACCTGTGATTGCGTCGc > 2:740049/1‑91 (MQ=255) aaTCTTCGAATTTTCGTCCGACATGTCTATAACGTGTTCAGCGCTGATCGCGCTGACAAAGACCTGTGATTGCGTCGCTTTTAAGCGGCTg < 2:467801/90‑1 (MQ=255) gACATGTCTATAACGTGTTCAGCGCTGATCGCGCTGACAAAGACCTGTGATTGCGTCGCTTTTAAGCGGCTGGCAAGCAGCCCGCGACGCt > 1:356363/1‑91 (MQ=255) gtgtTCAGCGCTGATCGCGCTGACAAAGACCTGTGATTGCGTCGCTTTTAAGCGGCTGGCAAGCAGCCCGCGACGCTCATCATCAAGCTCa > 2:46354/1‑91 (MQ=255) gtgtTCAGCGCTGATCGCGCTGACAAAGACCTGTGATTGCGTCGCTTTTAAGCGGCTGGCAAGCAGCCCGCGACGCTCATCATCAAGCTCa > 1:316279/1‑91 (MQ=255) tgtTCAGCGCTGATCGCGCTGACAAAGACCTGTGATTGCGTCGCTTTTAAGCGGCTGGCAAGCAGCCCGCGACGCTCATCATCAAGCTCag > 2:574625/1‑91 (MQ=255) tgtTCAGCGCTGATCGCGCTGACAAAGACCTGTGATTGCGTCGCTTTTAAGCGGCTGGCAAGCAGCCCGCGACGCTCATCATCAAGCTCag > 2:348245/1‑91 (MQ=255) gtTCAGCGCTGATCGCGCTGACAAAGACCTGTGATTGCGTCGCTTTTAAGCGGCTGGCAAGCAGCCCGCGACGCTCATCATCTAGCTCagc > 2:741046/1‑90 (MQ=255) gtTCAGCGCTGATCGCGCTGACAAAGACCTGTGATTGCGTCGCTTTTAAGCGGCTGGCAAGCAGCCCGCGACGCTCATCATCAAGCTCaga > 2:198938/1‑91 (MQ=255) | ATACTTGGGTTAATCCGTTATTTTACCCTTTTCCACGGTAAACATCTTCGAATTTTCGTCCGACATGTCTATAACGTGTTCAGCACTGATCGCGCTGACAAAGACCTGTGATTGCGTCGCTTTTAAGCGGCTGGCAAGCAGCCCGCGACGCTCATCATCAAGCTCAGA > NZ_CP009273/3873499‑3873666 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |