| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,321,803 | T→C | H495H (CAT→CAC) | proP → | glycine betaine/L‑proline transporter ProP |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,321,803 | 0 | T | C | 100.0% | 49.3 / NA | 14 | H495H (CAT→CAC) | proP | glycine betaine/L‑proline transporter ProP |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (8/6); total (8/6) | |||||||||||
ACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAA > NZ_CP009273/4321718‑4321887 | aCGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCcgcg < 2:789195/91‑1 (MQ=255) gAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGGAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAAt > 1:664764/1‑91 (MQ=255) gAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAAt > 1:291382/1‑91 (MQ=255) gAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAAt > 1:87964/1‑91 (MQ=255) aaTCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGaa < 2:87964/91‑1 (MQ=255) tgatATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGAt < 2:419748/91‑1 (MQ=255) aCCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGAt > 1:285289/1‑91 (MQ=255) gagaTTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGAc < 2:712607/91‑1 (MQ=255) ttGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTg > 1:166820/1‑91 (MQ=255) aCCCGCCTGGTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAActct > 1:661503/1‑91 (MQ=255) ggTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTc < 2:262905/91‑1 (MQ=255) ggTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTc < 2:858099/91‑1 (MQ=255) gTGCAGCAACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCa > 2:502655/1‑91 (MQ=255) gcaACACCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTaa > 2:378140/1‑91 (MQ=255) | ACGATAATATCGAGCAGAAAATCGATGATATTGACCACGAGATTGCCGATTTGCAGGCGAAACGTACCCGCCTGGTGCAGCAACATCCGCGAATTGATGAATAAGCTGAAACGGATGGCCTGATGTGACGCTGTCTTATCAGGCCAATTGAACTCTTAAGGTTCACTTAA > NZ_CP009273/4321718‑4321887 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |