| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,068,442 | A→C | G323G (GGT→GGG) | rutA ← | pyrimidine utilization protein A |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,068,442 | 0 | A | C | 100.0% | 57.5 / NA | 18 | G323G (GGT→GGG) | rutA | pyrimidine utilization protein A |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (5/13); total (5/13) | |||||||||||
CGCGGCATTGCATCAGTGGTTGAATGCGCTCGCCGAAGGTTTCGATTCCCGACAGAAAATCGTCGAAGGTTAACAGCACGCCTTCGGCACCAGGCACGCTTGCGACTTCATCTAACATGCGCGCGACACTGGCGTAAGAACCGACTAACGTCCCCATATTGATGTTTACCGC > NZ_CP009273/1068354‑1068525 | cgcgGCATTGCATCAGTGGTTGAATGCGCTCGCCGAAGGTTTCGATTCCCGACAGAAAATCGTCGAAGGTTAACAGCACGCCTTCGGcccc > 1:667361/1‑91 (MQ=255)cgcgGCATTGCATCAGTGGTTGAATGCGCTCGCCGAAGGTTTCGATTCCCGACAGAAAATCGTCGAAGGTTAACAGCACGCCTTCGGcccc > 1:68527/1‑91 (MQ=255) ttGCATCAGTGGTTGAATGCGCTCGCCGAAGGTTTCGATTCCCGACAGAAAATCGTCGAAGGTTAACAGCACGCCTTCGGCCCCAGGCACg > 2:369453/1‑91 (MQ=255) tGGTTGAATGCGCTCGCCGAAGGTTTCGATTCCCGACAGAAAATCGTCGAAGGTTAACAGCCCGCCTTCGGCCCCAGGCACGCTTGCGACt < 2:821612/91‑1 (MQ=255) tGGTTGAATGCGCTCGCCGAAGGTTTCGATTCCCGACAGAAAATCGTCGAAGGTTAACAGCACGCCTTCGGCCCCAGGCACGCTTGCGACt < 2:401956/91‑1 (MQ=255) tGGTTGAATGCGCTCGCCGAAGGTTTCGATTCCCGACAGAAAATCGTCGAAGGTTAACAGCACGCCTTCGGCCCCAGGCACGCTTGCGACt < 1:521026/91‑1 (MQ=255) gcTCGCCGAAGGTTTCGATTCCCGACAGAAAATCGTCGAAGGTTAACAGCACGCCTTCGGCCCCAGGCACGCTTGCGACTTCATCTAACAt > 2:416565/1‑91 (MQ=255) cTCGCCGAAGGTTTCGATTCCCGACAGAAAATCGTCGAAGGTTAACAGCACGCCTTCGGCCCCAGGCACGCTTGCGACTTCATCTAACATg < 1:369453/91‑1 (MQ=255) cGAAGGTTTCCATTCCCGACAGAAAATCGTCGAAGGTTAACAGCACGCCTTCGGCCCCAGGCACGCTTGCGACTTCATCTAACATgcgcgc < 2:377780/91‑1 (MQ=255) gTTTCGATTCCCGACAGAAAATCGTCGAAGGTTAACAGCACGCCTTCGGCCCCAGGCACGCTTGCGACTTCATCTAACATGCGCGCGacac < 1:801880/91‑1 (MQ=255) ttCGATTCCCGACAGAAAATCGTCGAAGGTTAACAGCACGCCTTCGGCCCCAGGCACGCTTGCGACTTCATCTAACATGCGCGCGACACTg < 2:515969/91‑1 (MQ=255) cccGACAGAAAATCGTCGAAGGTTAACAGCACGCCTTCGGCCCCAGGCACGCTTGCGACTTCATCTAACATGCGCGCGACACTGGCGTAAg > 1:736188/1‑91 (MQ=255) cgtcgAAGGTTAACAGCACGCCTTCGGCCCCAGGCACGCTTGCGACTTCATCTAACATGCGCGCGACACTGGCGTAAGAACCGACTAACGt < 2:329925/91‑1 (MQ=255) cgAAGGTTAACAGCACGCCTTCGGCCCCTGGCACGCTTGCGACTTCATCTAACATGCGCGCGACACTGGCGTAAGAACCGACTAACGTccc < 2:464245/91‑1 (MQ=255) gTTAACAGCACGCCTTCGGCCCCAGGCACGCTTGCGACTTCCTCTAACATGCGCGCGACACTGGCGTAAGAACCGACTAACGTCCCCatat < 1:548420/91‑1 (MQ=255) gTTAACAGCACGCCTTCGGCCCCAGGCACGCTTGCGACTTCATCTAACATGCGCGCGACACTGGCGTAAGAACCGACTAACGTCCCCatat < 2:32735/91‑1 (MQ=255) gCACGCCTTCGGCCCCAGGCACGCTTGCGACTTCATCTAACATGCGCGCGACACTGGCGTAAGAACCGACTAACGTCCCCATATTGATGtt > 1:358160/1‑91 (MQ=255) cGCCTTCGGCCCCAGGCACGCTTGCGACTTCATCTAACATgcgcgc > 2:398059/1‑46 (MQ=255) cGCCTTCGGCCCCAGGCACGCTTGCGACTTCATCTAACATgcgcgc < 1:398059/46‑1 (MQ=255) cTTCGGCCCCAGGCACGCTTGCGACTTCATCTAACATGCGCGCGACACTGGCGTAAGAACCGACTAACGTCCCCATATTGATGTTTAccgc < 1:451687/91‑1 (MQ=255) | CGCGGCATTGCATCAGTGGTTGAATGCGCTCGCCGAAGGTTTCGATTCCCGACAGAAAATCGTCGAAGGTTAACAGCACGCCTTCGGCACCAGGCACGCTTGCGACTTCATCTAACATGCGCGCGACACTGGCGTAAGAACCGACTAACGTCCCCATATTGATGTTTACCGC > NZ_CP009273/1068354‑1068525 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 18 ≤ ATCG/ATCG < 28 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |