| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,097,764 | A→G | N78N (AAT→AAC) | csgE ← | curli production assembly/transport protein CsgE |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,097,764 | 0 | A | G | 100.0% | 76.6 / NA | 21 | N78N (AAT→AAC) | csgE | curli production assembly/transport protein CsgE |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (6/15); total (6/15) | |||||||||||
TTCTTCAGTTTGAATCAGTGCAAAGACGACAGTTTTCTCGAAGTCTCTTTTCAACGGAAATAAAAAAGTCTGGAAAATAACGTCCTGATTGACCGTTATAGTGATCCAGCTTCCCCATCGTGCACTGGGCCTTTCATTAATCGTTAAGTTACCCGTATAGTCACTTTCCCATT > NZ_CP009273/1097677‑1097849 | ttcttcAGTTTGAATCAGTGCAAAGACGACAGTTTTCTCGAAGTCTCTTTTCAACGGAAATAAAAAAGTCTGGAAAATAACGTCCTGGTTg < 1:656572/91‑1 (MQ=255)ttcttcAGTTTGAATCAGTGCAAAGACGACAGTTTTCTCGAACTCTCTTTTCAACGGAAATAAAAAAGTCTGGAAAATAACGTCCTGGTTg < 1:815153/91‑1 (MQ=255) cttcAGTTTGAATCAGTGCAAAGACGACAGTTTTCTCGAAGTCTCTTTTCAACGGAAATAAAAAAGTCTGGAAAATAACGTCCTGGTTGAc < 2:643549/91‑1 (MQ=255) gacgacAGTTTTCTCGAAGTCTCTTTTCAACGGAAATAAAAAAGTCTGGAAAATAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTccc < 1:242278/91‑1 (MQ=255) gacgacAGTTTTCTCGAAGTCTCTTTTCAACGGAAATAAAAAAGTCTGGAAAATAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTccc < 1:804168/91‑1 (MQ=255) gacgacAGTTTTCTCGAAGTCTCTTTTCAACGGAAATAAAAAAGTCTGGAAAATAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTccc < 2:573594/91‑1 (MQ=255) gacAGTTTTCTCGAAGTCTCTTTTCAACGGAAATAAAAAAGTCTGGAAAATAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTCCCCAt > 1:103363/1‑91 (MQ=255) gacAGTTTTCTCGAAGTCTCTTTTCAACGGAAATAAAAAAGTCTGGAAAATAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTCCCCAt > 1:448520/1‑91 (MQ=255) gacAGTTTTCTCGAAGTCTCTTTTCAACGGAAATAAAAAAGTCTGGAAAATAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTCCCCAt > 2:65189/1‑91 (MQ=255) cAGTTTTCTCGAAGTCTCTTTTCAACGGAAATAAAAAAGTCTGGAAAATAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTCCCCATCg < 2:457053/91‑1 (MQ=255) aGTTTTCTCGAAGTCTCTTTTCAACGGAAATAAAAAAGTCTGGAAAATAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTCCCCATCGt < 2:510091/91‑1 (MQ=255) tttCTCGAAGTCTCTTTTCAACGGAAATAAAAAAGTCGGGAAAATAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTCCCCATCGTGCa < 2:73434/91‑1 (MQ=255) ctctTTTCAACGGAAATAAAAAAGTCTGGAAAATAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTCCCCATCGTGCACTGGGCCTTTc > 2:485592/1‑91 (MQ=255) ggAAATAAAAAAGTCTGGAAAATAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTCCCCATCGTGCACTGGGCCTTTCATTAATCGTTa < 1:634764/91‑1 (MQ=255) gAAATAAAAAAGTCTGGAAAATAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTCCCCATCGTGCACTGGGCCTTTCATTAATCGTTaa > 1:213983/1‑91 (MQ=255) aaTAAAAAAGTCTGGAAAATAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTCCCCATCGTGCACTGGGCCTTTCATTAATCGTTAAGt > 1:511499/1‑91 (MQ=255) aTAAAAAAGTCTGGAAAATAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTCCCCATCGTGCACTGGGCCTTTCATTAATCGTTAAGtt < 1:604672/91‑1 (MQ=255) aTAAAAAAGTCTGGAAAATAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTCCCCATCGTGCACTGGGCCTTTCATTAATCGTTAAGtt < 2:868950/91‑1 (MQ=255) aaaaGTCTGGAAAATAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTCCCCATCGTGCACTGGGCCTTTCATTAATCGTTAAGTTAccc < 2:116289/91‑1 (MQ=255) aaaaTAACGTCCTGGTTGACCGTTATAGTGATCCAGCTTCCCCATCGTGCACTGGGCCTTTCATTAATCGTTAAGTTACCCGTATAGTCAc < 2:133610/91‑1 (MQ=255) tCCTGGTTGACCGTTATAGTGATCCAGCTTCCCCATCGTGCACTGGGCCTTTCATTAATCGTTAAGTTACCCGTATAGTCACTTTCCCAtt < 1:785991/91‑1 (MQ=255) | TTCTTCAGTTTGAATCAGTGCAAAGACGACAGTTTTCTCGAAGTCTCTTTTCAACGGAAATAAAAAAGTCTGGAAAATAACGTCCTGATTGACCGTTATAGTGATCCAGCTTCCCCATCGTGCACTGGGCCTTTCATTAATCGTTAAGTTACCCGTATAGTCACTTTCCCATT > NZ_CP009273/1097677‑1097849 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |