| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 196,898 | T→A | intergenic (+51/‑71) | bamA → / → skp | outer membrane protein assembly factor BamA/molecular chaperone Skp |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 196,898 | 0 | T | A | 97.6% | 147.6 / NA | 41 | intergenic (+51/‑71) | bamA/skp | outer membrane protein assembly factor BamA/molecular chaperone Skp |
| Reads supporting (aligned to +/- strand): ref base T (0/0); major base A (22/18); minor base C (1/0); total (23/18) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.00e+00 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
GAACAGTTCCAGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAAATGGGATGGTAAGGAGTTTATTGTGAAAAAGTGGTTA > NZ_CP009273/196812‑196983 | gAACAGTTCCAGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAat < 2:312205/91‑1 (MQ=255) gTTCCAGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAg > 1:460527/1‑91 (MQ=255) gTTCCAGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAg > 2:656571/1‑91 (MQ=255) gTTCCAGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAg > 2:747440/1‑91 (MQ=255) ttCCAGTTTAACATCGGTAAAACCTGGTAAGCGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGa > 2:772043/1‑91 (MQ=255) aaCATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGACCAATATAAGATCGCCGGGc > 2:144928/1‑91 (MQ=255) aaCATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGc < 2:856632/91‑1 (MQ=255) cATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCa < 1:870273/91‑1 (MQ=255) tCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCa < 2:130403/89‑1 (MQ=255) tCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCa > 1:130403/1‑89 (MQ=255) ggTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCa > 2:415264/1‑91 (MQ=255) tGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGc > 1:145527/1‑91 (MQ=255) gTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCa > 1:588999/1‑76 (MQ=255) gTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCa < 2:588999/76‑1 (MQ=255) gtgtTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTc > 1:374490/1‑91 (MQ=255) tgtTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTcc < 1:656571/91‑1 (MQ=255) gtTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCg > 1:468711/1‑91 (MQ=255) ttCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCgg < 1:283532/91‑1 (MQ=255) ctcCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTg > 2:520734/1‑91 (MQ=255) caAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAAAt > 1:458599/1‑91 (MQ=255) aaGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTcc > 1:187269/1‑80 (MQ=255) aaGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTcc < 2:187269/80‑1 (MQ=255) aaGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa > 2:98123/1‑87 (MQ=255) aaGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCaa < 1:98123/87‑1 (MQ=255) aaGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAAATgg > 2:401121/1‑91 (MQ=255) ggAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAAATGGGa < 2:685978/91‑1 (MQ=255) aTGTAGTGGTAGTGTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAAATGGGATgg > 2:323711/1‑91 (MQ=255) agtggtagtgTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAAATGGGATGGTAAg < 1:85447/91‑1 (MQ=255) agtggtagtgTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAAATGGGATGGTAAg < 1:104746/91‑1 (MQ=255) agtggtagtgTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAAATGGGATGGTAAg < 2:676055/91‑1 (MQ=255) agtggtagtgTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAAATGGGATGGTAAg < 1:360178/91‑1 (MQ=255) gtggtagtgTAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAAATGGGATGGTAAgg > 1:274630/1‑91 (MQ=255) tgtAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAAATGGGATGGTAAGGAGTTTAt > 1:702131/1‑91 (MQ=255) tgtAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAAATGGGATGGTAAGGAGTTTAt < 1:496380/91‑1 (MQ=255) gtAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCa < 1:698843/42‑1 (MQ=255) gtAGCGATGACTTTAGGCGAACAATATAAGATCGCCGGGCCa > 2:698843/1‑42 (MQ=255) gATGACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAAATGGGATGGTAAGGAGTTTATTGTGaa > 2:778617/1‑91 (MQ=255) gACTTTAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAAATGGGATGGTAAGGAGTTTATTGTGaaaaa > 2:254922/1‑91 (MQ=255) ttAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCa > 1:32818/1‑56 (MQ=255) ttAGGCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCa < 2:32818/56‑1 (MQ=255) ggCGAACAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAAATGGGATGGTAAGGAGTTTATTGTGAAAAAGTGGtta < 1:387777/91‑1 (MQ=255) | GAACAGTTCCAGTTTAACATCGGTAAAACCTGGTAAGTGTTCTCCACAAAGGAATGTAGTGGTAGTGTAGCGATGACTTTAGGCGATCAATATAAGATCGCCGGGCCACGCAAAGAACTGCACCCTCCGGTGCAAATGGGATGGTAAGGAGTTTATTGTGAAAAAGTGGTTA > NZ_CP009273/196812‑196983 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |