| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,506,028 | G→A | A40T (GCC→ACC) | ydcS → | ABC transporter substrate‑binding protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,506,028 | 0 | G | A | 100.0% | 73.1 / NA | 22 | A40T (GCC→ACC) | ydcS | ABC transporter substrate‑binding protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base A (9/13); total (9/13) | |||||||||||
AGCATGACAATAATGACCGCTCACGCCGCCGAACCGCCTACCAATTTAGATAAACCGGAAGGGCGACTGGATATTATCGCCTGGCCGGGATACATCGAACGCGGACAAACTGATAAACAATACGACTGGGTAACGCAGTTCGAAAAAGAGACAGGCTGCGCGGTGA > NZ_CP009273/1505950‑1506115 | aGCATGACAATAATGACCGCTCACGCCGCCGAACCGCCTACCAATTTAGATAAACCGGAAGGGCGACTGGATATTATCACCTGGCCGGGAt > 1:531003/1‑91 (MQ=255) ataatGACCGCTCACGCCGCCGAACCGCCTACCAATTTAGATAAACCGGAAGGGCGACTGGATATTATCACCTGGCCGGGATACATCGAAc < 2:121173/91‑1 (MQ=255) gACCGCTCACGCCGCCGAACCGCCTACCAATTTAGATAAACCGGAAGGGCGACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGa > 1:285336/1‑91 (MQ=255) ccGCTCACGCCGCCGAACCGCCTACCAATTTAGATAAACCGGAAGGGCGACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGACa > 1:347360/1‑91 (MQ=255) cGCTCACGCCGCCGAACCGCCTACCAATTTAGATAAACCGGAAGGGCGACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGACaa < 1:86928/91‑1 (MQ=255) cGCTCACGCCGCCGAACCGCCTACCAATTTAGATAAACCGGAAGGGCGACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGACaa < 2:143845/91‑1 (MQ=255) cTCACGCCGCCGAACCGCCTACCAATTTAGATAAACCGGAAGGGCGACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGACAAAc < 1:363131/91‑1 (MQ=255) ccgccgAACCGCCTACCAATTTAGATAAACCGGAAGGGCGACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGACAAACTGATaa < 1:495951/91‑1 (MQ=255) ccgccgAACCGCCTACCAATTTAGATAAACCGGAAGGGCGACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGACAAACTGATaa < 1:557375/91‑1 (MQ=255) gccgAACCGCCTACCAATTTAGATAAACCGGAAGGGCGACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGACAAACTGATAAAc > 1:695462/1‑91 (MQ=255) gCCTACCAATTTAGATAAACCGGAAGGGCGACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGACAAACTGATAAACAATACGAc > 1:605523/1‑91 (MQ=255) gCCTACCAATTTAGATAAACCGGAAGGGCGACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGACAAACTGATAAACAATACGAc < 2:548969/91‑1 (MQ=255) gCCTACCAATTTAGATAAACCGGAAGGGCGACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGACAAACTGATAAACAATACGAc < 2:214816/91‑1 (MQ=255) ttAGATAAACCGGAAGGGCGACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGACAAACTGATAAACAATACGACTGGGTAACGc < 2:285336/91‑1 (MQ=255) aaCCGGAAGGGCGACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGACAAACTGATAAACAATACGACTGGGTAACGCAGTTCGa > 2:269377/1‑91 (MQ=255) gCGACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGACAAACTGATAAACAATACGACTGGGTAACGCAGTTCGAAAAAGAGACa > 2:762759/1‑91 (MQ=255) gACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGACaa < 2:208721/44‑1 (MQ=255) gACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGACaa > 1:208721/1‑44 (MQ=255) gACTGGATATTATCACCTGGCCGGGATACATCGAACGCGGACAAACTGATAAACAATACGACTGGGTAACGCAGTTCGAAAAAGAGACAgg > 2:241935/1‑91 (MQ=255) atatTATCACCTGGCCGGGATACATCGAACGCGGACAAACTGATAAACAATACGACTGGGTAACGCAGTTCGAAAAAGAGACAGGCTgcgc < 2:234583/91‑1 (MQ=255) atatTATCACCTGGCCGGGATACATCGAACGCGGACAAACTGATAAACAATACGACTGGGTAACGCAGTTCGAAAAAGAGACAGGCTgcgc < 1:435279/91‑1 (MQ=255) atCACCTGGCCGGGATACATCGAACGCGGACAAACTGATAAACAATACGACTGGGTAACGCAGTTCGAAAAAGAGACAGGCTGCGCGGTGa < 2:32034/91‑1 (MQ=255) | AGCATGACAATAATGACCGCTCACGCCGCCGAACCGCCTACCAATTTAGATAAACCGGAAGGGCGACTGGATATTATCGCCTGGCCGGGATACATCGAACGCGGACAAACTGATAAACAATACGACTGGGTAACGCAGTTCGAAAAAGAGACAGGCTGCGCGGTGA > NZ_CP009273/1505950‑1506115 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 23 ≤ ATCG/ATCG < 31 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |