| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,707,599 | A→T | I192F (ATC→TTC) | dtpA → | dipeptide/tripeptide permease DtpA |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,707,599 | 0 | A | T | 100.0% | 99.7 / NA | 27 | I192F (ATC→TTC) | dtpA | dipeptide/tripeptide permease DtpA |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base T (14/13); total (14/13) | |||||||||||
CTCTTTCTTCTCTATGATTGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGTTCAAAACCAGACTTCGAGCCTATCAACTACCGTAAC > NZ_CP009273/1707511‑1707685 | ctctTTCTTCTCTATGATTGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGTTc < 2:24041/91‑1 (MQ=255) tctttcttCTCTATGATTGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGTTCa > 1:402992/1‑91 (MQ=255) tGATTGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGTTCACTATCGTTAACtt < 1:126820/91‑1 (MQ=255) tGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGGGTTGCGTTTGCGTTGAGCGTTGTAGGGCTGCTGTTCACTATCGTTAACTTCGcc > 2:553569/1‑91 (MQ=255) cTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGTTCACTATCGTTAACTTCGCCtt < 2:500845/91‑1 (MQ=255) ccGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGTTCACTATCGTTAACTTCGCCTTCTGcc > 1:148577/1‑91 (MQ=255) gTGGCTGGCCGCGAAATACGGCTGGGGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGTTCACTATCGTTAACTTCGCCTTCTGccca > 2:161000/1‑89 (MQ=255) gTGGCTGGCCGCGAAATACGGCTGGAGGGTTGCGTTTGCGTTGAGCGTTGTAGGGCTGCTGTTCACTATCGTTAACTTCGCCTTCTGCCaa > 1:16175/1‑91 (MQ=255) gctggcCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGTTCACTATCGTTAACTTCGCCTTCTGCCAACGc < 2:402992/91‑1 (MQ=255) gctggcCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGTTCACTATCGTTAACTTCGCCTTCTGCCAACGc < 1:567860/91‑1 (MQ=255) gcgcgAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGTTCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGt < 1:512859/90‑1 (MQ=255) ccGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGTTCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGt < 1:718385/91‑1 (MQ=255) ccGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGTTCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGt < 1:273172/91‑1 (MQ=255) aaaTACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGTTCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAAc < 2:731783/91‑1 (MQ=255) ggCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGTTCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACg < 2:557096/91‑1 (MQ=255) tgcgtttgcgttGAGCGTTGTAGGCCTGCTGTTCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGTTCAAAACCa > 1:63737/1‑91 (MQ=255) tttgcgttGAGCGTTGTAGGCCTGCTGTTCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGTTCAAAACCAGACt > 2:821032/1‑91 (MQ=255) gAGCGTTGTAGGCCTGCTGTTCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGTTCAAAACCAGACTTCGAGCCt > 1:289101/1‑91 (MQ=255) ttGTAGGCCTGCTGTTCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGTTCAAAACCAGACTTCGAGCCTATCaa > 1:601434/1‑91 (MQ=255) ctgctgTTCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGTTCAAAACCAGACTTCGAGCCTATCAACTACCGTa > 2:170556/1‑91 (MQ=255) tgctgTTCACTATCGTTAACTTCGCCTTCTGCCAACGc > 2:154001/1‑38 (MQ=38) tgctgTTCACTATCGTTAACTTCGCCTTCTGCCAACGc < 1:154001/38‑1 (MQ=38) gctgTTCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGTTCAAAACCAGACTTCGAGCCTa < 1:396142/77‑1 (MQ=255) gctgTTCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGTTCAAAACCAGACTTCGAGCCTa > 2:210291/1‑77 (MQ=255) gctgTTCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGTTCAAAACCAGACTTCGAGCCTa > 2:396142/1‑77 (MQ=255) gctgTTCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGTTCAAAACCAGACTTCGAGCCTa < 1:210291/77‑1 (MQ=255) gctgTTCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGTTCAAAACCAGACTTCGAGCCTATCAACTACCGTAAc > 1:360823/1‑91 (MQ=255) gctgTTCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGTTCAAAACCAGACTTCGAGCCTATCAACTACCGTAAc > 2:743223/1‑91 (MQ=255) | CTCTTTCTTCTCTATGATTGCTACGCCGTGGCTGGCCGCGAAATACGGCTGGAGTGTTGCGTTTGCGTTGAGCGTTGTAGGCCTGCTGATCACTATCGTTAACTTCGCCTTCTGCCAACGCTGGGTTAAACAGTACGGTTCAAAACCAGACTTCGAGCCTATCAACTACCGTAAC > NZ_CP009273/1707511‑1707685 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 19 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |