| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,461,422 | (G)5→4 | pseudogene (1774/2526 nt) | BW25113_RS07350 → | autotransporter domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,461,418 | 0 | G | . | 100.0% | 89.0 / NA | 21 | pseudogene (1770/2526 nt) | BW25113_RS07350 | autotransporter domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (10/11); total (10/11) | |||||||||||
ATGGTAGCCTGACTGTTACAGGCGGTGCGCATGGTGTTGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTC‑AGCATCACAACCAACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGAC > NZ_CP009273/1461291‑1461540 | aTGGTAGCCTGACTGTTACAGGCGGTGCGCATGGTGTTGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTa < 1:323152/139‑1 (MQ=255)aTGGTAGCCTGACTGTTACAGGCGGTGCGCATGGTGTTGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTa < 1:362128/139‑1 (MQ=255) aCTGTTACAGGCGGTGCGCATGGTGTTGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACggg < 1:242995/139‑1 (MQ=255) aCTGTTACAGGCGGTGCGCATGGTGTTGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACggg > 1:389590/1‑139 (MQ=255) tGCGCATGGTGTTGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGt > 2:424332/1‑137 (MQ=255) tGCGCATGGTGTTGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGt > 2:404159/1‑137 (MQ=255) ggTGTTGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATg > 2:22138/1‑138 (MQ=255) tGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGa > 1:426156/1‑139 (MQ=255) agaACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACa < 1:424332/139‑1 (MQ=255) ggCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTC‑AGCATCAcaac < 2:209969/139‑1 (MQ=255) aGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGa > 1:100611/1‑103 (MQ=255) aGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGa < 2:100611/103‑1 (MQ=255) aGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTC‑AGCATCACAACCAACAGTGGGAAGGttt > 1:82174/1‑139 (MQ=255) atTGTTGTTCCGGTTCCTGGACCGTTGGGCGGGTCAACCACCGGGGA‑GGGGAACCAGTTCCCAAAACGGGGGAGGTAAACGTTAGCAATGAGGCG‑CAGGGGTCAAGAACCACACCCAAAAGT‑GGAAGGTTTCGCTggca < 2:373883/139‑1 (MQ=255) ttgttTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTC‑AGCATCACAACCAACAGTGGGAAGGTTTCGCTggcagg < 1:224390/138‑1 (MQ=255) tCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTC‑AGCATCACAACCAACAGTGGGAAGGTTTCGCTGGCAGGCAGTAt > 2:227384/1‑139 (MQ=255) tGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCATTACGGGTGATGTTAACGTTAGCAATGAAGCGa < 1:388584/70‑1 (MQ=255) tGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGa > 2:388584/1‑70 (MQ=255) cGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTC‑AGCATCACAACCAACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGa > 2:285599/1‑139 (MQ=255) gTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTC‑AGCATCACAACCAACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGAc < 2:389590/139‑1 (MQ=255) gTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTC‑AGCATCACAACCAACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGAc < 1:22138/139‑1 (MQ=255) | ATGGTAGCCTGACTGTTACAGGCGGTGCGCATGGTGTTGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTC‑AGCATCACAACCAACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGAC > NZ_CP009273/1461291‑1461540 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |