| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,056,472 | T→G | P112P (CCA→CCC) | ldtA ← | L,D‑transpeptidase |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,056,472 | 0 | T | G | 100.0% | 66.1 / NA | 18 | P112P (CCA→CCC) | ldtA | L,D‑transpeptidase |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base G (9/9); total (9/9) | |||||||||||
GGCGTTGGCGTCCAGGTTGGAGCTTCTTGTTTACGTTCAACGGTAGTCACCCAGTTACGCGGGGTTTCTCGCCCAGCCTGGCCGATACCAATAGGAAAGACTTCCACAGTATTACTGTCTGGTGGGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAGTGTCGGGCAAAATCAGTTGCTGCGGAATGGTGAGTTGCGAGCCAGACTTCGGCAAAAAAACATCAGCGCCCGGGTTCGCT > NZ_CP009273/2056350‑2056607 | ggCGTTGGCGTCCAGGTTGGAGCTTCTTGTTTACGTTCAACGGTAGTCACCCAGTTACGCGGGGTTTCTCGCCCAGCCTGGCCGATACCAATAGGAAAGACTTCCACAGTATTACTGTCTGGGGGGTAGTAATAAAGa < 1:84518/138‑1 (MQ=255) gCGTCCAGGTTGGAGCTTCTTGTTTACGTTCAACGGTAGTCACCCAGTTACGCGGGGTTTCTCGCCCAGCCTGGCCGATACCAATAGGAAAGACTTCCACAGTATTACTGTCTGGGGGGTAGTAATAAAGACGCAtct > 1:4336/1‑138 (MQ=255) cAGGTTGGAGCTTCTTGTTTACGTTCAACGGTAGTCACCCAGTTACGCGGGGTTTCTCGCCCAGCCTGGCCGATACCAATAGGAAAGACTTCCACAGTATTACTGTCTGGGGGGTAGTAATAAAGACGCATCTCAGCg < 1:420258/138‑1 (MQ=255) cttGTTTACGTTCAACGGTAGTCACCCAGTTACGCGGGGTTTCTCGCCCAGCCTGGCCGATACCAATAGGAAAGACTTCCACAGTATTACTGTCTGGGGGGTAGTAATAAAGACGCATCTCAGCGACGTTAAcaacaa < 1:128118/138‑1 (MQ=255) cttGTTTACGTTCAACGGTAGTCACCCAGTTACGCGGGGTTTCTCGCCCAGCCTGGCCGATACCAATAGGAAAGACTTCCACAGTATTACTGTCTGGGGGGTAGTAATAAAGACGCATCTCAGCGACGTTAAcaacaa < 1:120586/138‑1 (MQ=255) tttACGTTCAACGGTAGTCACCCAGTTACGCGGGGTTTCTCGCCCAGCCTGGCCGATACCAATAGGAAAGACTTCCACAGTATTACTGTCTGGGGGGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATccc < 2:4336/138‑1 (MQ=255) aCGTTCAACGGTAGTCACCCAGTTACGCGGGGTTTCTCGCCCAGCCTGGCCGATACCAATAGGAAAGACTTCCACAGTATTACTGTCTGGGGGGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCttt < 1:329803/138‑1 (MQ=255) gTACTCCCCCAGTTACGCCGGCTTTCTCGCCCAGCCTGGCCGATACCAATAAGAAAGACTTCCACAGTATTACTGTCTGGGGGGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAgtgt < 2:350243/139‑1 (MQ=255) gTTACGCGGGGTTTCTCGCCCAGCCTGGCCGATACCAATAGGAAAGACTTCCACAGTATTACTGTCTGGGGGGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAGTGTCGGGCAAAAt > 1:8073/1‑138 (MQ=255) gCCCAGCCTGGCCGATACCAATAGGAAAGACTTCCACAGTATTACTGTCTGGGGGGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAGTGTCGGGCAAAATCAGTTGCTGCGGAATg < 2:8073/137‑1 (MQ=255) ccAGCCTGGCCGATACCAATAGGAAAGACTTCCACAGTATTACTGTCTGGGGGGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAGTGTCGGGCAAAATCAGTTGCTGCGGAATGGt > 1:412251/1‑137 (MQ=255) gCCGATACCAATAGGAAAGACTTCCACAGTATTACTGTCTGGGGGGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAGTGTCGGGCAAAATCAGTTGCTGCGGAATGGTGAGtt < 1:390244/134‑1 (MQ=255) gCCGATACCAATAGGAAAGACTTCCACAGTATTACTGTCTGGGGGGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAGTGTCGGGCAAAATCAGTTGCTGCGGAATGGTGAGtt > 2:390244/1‑134 (MQ=255) tACCAATAGGAAAGACTTCCACAGTATTACTGTCTGGGGGGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAGTGTCGGGCAAAATCAGTTGCTGCGGAATGGTGAGTTGCGAGCCAGa > 2:393834/1‑139 (MQ=255) tACCAATAGGAAAGACTTCCACAGTATTACTGTCTGGGGGGAAGGAATAAAGACGAAGCCCAGCGACGTAAAAAACAACCCCTTAACGAACAGTGTCGGCCAAAATCAGTTGCTGCGGAATGGGGAGTGGCGAGcaggc > 1:215353/1‑135 (MQ=255) aCCAATAGGAAAGACTTCCACAGTATTACTGTCTgggggg < 1:236269/40‑1 (MQ=255) aCCAATAGGAAAGACTTCCACAGTATTACTGTCTgggggg > 2:236269/1‑40 (MQ=255) aCCAATAGGAAAGACTTCCACAGTATTACTGTCTGGGGGGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAGTGTCGGGCAAAATCAGTTGCTGCGGAATGGTGAGTTGCGAGCCAGAc > 1:8952/1‑139 (MQ=255) gACTTCCACAGTATTACTGTCTGGGGGGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAGTGTCGGGCAAAATCAGTTGCTGCGGAATGGTGAGTTGCGAGCCAGACTTCGGCaaaaa > 2:240399/1‑138 (MQ=255) tCTGGGGGGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAGTGTCGGGCAAAATCAGTTGCTGCGGAATGGTGAGTTGCGAGCCAGACTTCGGCAAAAAAACATCAGCGCCCGGGTTCg > 2:314908/1‑139 (MQ=255) tgggggGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATccc > 1:18790/1‑48 (MQ=255) tgggggGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATccc < 2:18790/48‑1 (MQ=255) tgggggGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAGTGTCGGGCAAAATCAGTTGCTGCGGAATGGTGAGTTGCGAGCCAGACTTCGGCAAAAAAACATCAGCGCCCGGGTTCGCt > 2:126293/1‑139 (MQ=255) tgggggGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAGTGTCGGGCAAAATCAGTTGCTGCGGAATGGTGAGTTGCGAGCCAGACTTCGGCAAAAAAACATCAGCGCCCGGGTTCGCt > 2:31895/1‑139 (MQ=255) tgggggGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAGTGTCGGGCAAAATCAGTTGCTGCGGAATGGTGAGTTGCGAGCCAGACTTCGGCAAAAAAACATCAGCGCCCGGGTTCGCt > 2:183929/1‑139 (MQ=255) tgggggGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAGTGTCGGGCAAAATCAGTTGCTGCGGAATGGTGAGTTGCGAGCCAGACTTCGGCAAAAAAACATCAGCGCCCGGGTTCGCt > 1:372156/1‑139 (MQ=255) tgggggGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAGTGTCGGGCAAAATCAGTTGCTGCGGAATGGTGAGTTGCGAGCCAGACTTCGGCAAAAAAACATCAGCGCCCGGGTTCGCt > 1:245651/1‑139 (MQ=255) | GGCGTTGGCGTCCAGGTTGGAGCTTCTTGTTTACGTTCAACGGTAGTCACCCAGTTACGCGGGGTTTCTCGCCCAGCCTGGCCGATACCAATAGGAAAGACTTCCACAGTATTACTGTCTGGTGGGTAGTAATAAAGACGCATCTCAGCGACGTTAACAACAATCCCTTTACGAACAGTGTCGGGCAAAATCAGTTGCTGCGGAATGGTGAGTTGCGAGCCAGACTTCGGCAAAAAAACATCAGCGCCCGGGTTCGCT > NZ_CP009273/2056350‑2056607 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 15 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |