| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 386,451 | T→C | pseudogene (745/1527 nt) | BW25113_RS01915 → | outer membrane autotransporter barrel domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 386,451 | 0 | T | C | 100.0% | 77.7 / NA | 23 | pseudogene (745/1527 nt) | BW25113_RS01915 | outer membrane autotransporter barrel domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (13/10); total (13/10) | |||||||||||
TAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTGATTATGCTGGCCCGGGTGATGTTGCAATGTCCTTTACTGCTTCAGGTTCCGACTATGC > NZ_CP009273/386318‑386584 | tAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTCCGGGt < 1:274122/139‑1 (MQ=255) aaCATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTCCGGGtt > 1:282388/1‑139 (MQ=255) aCATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTCCGGGTTc < 1:419458/139‑1 (MQ=255) ccGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTCCGGGTTCAAATTATATCCTGGATAGCa < 2:282388/137‑1 (MQ=255) cgTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTCCGGGTTCAAATTATATCCTGGATAGCAATACt < 1:305123/139‑1 (MQ=255) aTCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTCCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCAc > 1:171476/1‑139 (MQ=255) tctcAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTCCGGGTTCAAAtt > 2:87167/1‑100 (MQ=255) tctcAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTCCGGGTTCAAAtt < 1:87167/100‑1 (MQ=255) aCAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTCCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCtgatg > 2:311422/1‑138 (MQ=255) aCAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTCCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCtgatg > 1:279590/1‑138 (MQ=255) cAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTCCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGaa > 1:246725/1‑139 (MQ=255) cAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTCCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGaa < 1:340258/139‑1 (MQ=255) ccGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTCCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTg > 2:396648/1‑99 (MQ=255) ccGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTCCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTg < 1:396648/99‑1 (MQ=255) ggATAACAATATCTCTGTAAAAGATTCCACAGTGACTCCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTGATTATGCTGGCCCGGGTGATGTTGCa < 1:124357/139‑1 (MQ=255) aaTATCTCTGTAAAAGATTCCACAGTGACTCAGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTGATTATGCTGGCCCGGGTGATGTTGCAATGTCCt > 1:253385/1‑139 (MQ=255) tatCTCTGTAAAAGATTCCACAGTGACTCCGGGTTCAAATTATATc > 2:97325/1‑46 (MQ=255) tatCTCTGTAAAAGATTCCACAGTGACTCCGGGTTCAAATTATATc < 1:97325/46‑1 (MQ=255) tGTAAAAGATTCCACAGTGACTCCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCaa > 2:172847/1‑63 (MQ=255) tGTAAAAGATTCCACAGTGACTCCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCaa < 1:172847/63‑1 (MQ=255) gTAAAAGATTCCACAGTGACTCCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGCGATTATGCTGGCCCGGGTGATGTTGCAATGTCCTTTACTGCtt > 1:157596/1‑139 (MQ=255) tAAAAGATTCCACAGTGACTCCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTGATTATGCTGGCCCGGGTGATGTTGCAATGTCCTTTACTGCtt > 2:273478/1‑138 (MQ=255) tGACTCCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTGATTATGCTGGCCCGGGTGATGTTGCAATGTCCTTTACTGCTTCAGGTTCCGACTATGc > 1:36978/1‑139 (MQ=255) | TAACATCAATATTTCCAATAACTCCCGCGTTGCAGGTATTGCATTATCTCAAGGTAATACTTACAACGAAACCTACACTACCGAATCTCATACTTGGGATAACAATATCTCTGTAAAAGATTCCACAGTGACTTCGGGTTCAAATTATATCCTGGATAGCAATACTTATGGCAAAACTGGTCACTTTGGCAATTCTGATGAACCGAGTGATTATGCTGGCCCGGGTGATGTTGCAATGTCCTTTACTGCTTCAGGTTCCGACTATGC > NZ_CP009273/386318‑386584 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |