| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 3,446,256 | A→C | G10G (GGT→GGG) | rplC ← | 50S ribosomal protein L3 |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 3,446,256 | 0 | A | C | 100.0% | 68.7 / NA | 20 | G10G (GGT→GGG) | rplC | 50S ribosomal protein L3 |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base C (8/12); total (8/12) | |||||||||||
TAGCACCGGTGGTCACCTGAATAGCACGGTAGCCATCGTTAGCCAGGTCTTTAACCTGAGTAACGCGGTTTGCTTCAACTTCGATTACGGTTACTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATACCCACTTTTTTACCGACTAAACCAATCATTGTTTCAACCTCTCAATCGCTCAATGACCTGATTAACCCAGGCTGATCTGCACGTCTACACCGGCAGCCAGATCCAGACGCATCAGAGCATCAACGGTTT > NZ_CP009273/3446123‑3446385 | tAGCACCGGTGGTCACCTGAATAGCACGGTAGCCATCGTTAGCCAGGTCTTTAACCTGAGTAACGCGGTTTGCTTCAACTTCGATTACGGTTACTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATCCCCa < 1:220518/138‑1 (MQ=255) tCACCTGAATAGCACGGTAGCCATCGTTAGCCAGGTCTTTAACCTGAGTAACGCGGTTTGCTTCAACTTCGATTACGGTTACTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATCCCCACTTTTTTACCGAc < 1:241821/139‑1 (MQ=255) tAGCCATCGTTAGCCAGGTCTTTAACCTGAGTAACGCGGTTTGCTTCAACTTCGATTACGGTTACTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGttt > 2:98425/1‑139 (MQ=255) tAGCCATCGTTAGCCAGGTCTTTAACCTGAGTAACGCGGTTTGCTTCAACTTCGATTACGGTTACTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGttt > 2:19302/1‑139 (MQ=255) gCCAGGTCTTTAACCTGAGTAACGCGGTTTGCTTCAACTTCGATTACGGTTACTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGTTTCAACCTCTCAAt < 1:98425/139‑1 (MQ=255) ccAGGTCTTTAACCTGAGTAACGCGGTTTGCTTCAACTTCGATTACGGTTACTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGTTTCAACCTCTCAATc < 2:407356/139‑1 (MQ=255) aGTAACGCGGTTTGCTTCAACTTCGATTACGGTTACTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGTTTCAACCTCTCAATCGCTCAATGACCTGa < 1:147744/137‑1 (MQ=255) cgcgGTTTGCTTCAACTTCGATTACGGTTACTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGTTTc < 1:238992/106‑1 (MQ=255) cgcgGTTTGCTTCAACTTCGATTACGGTTACTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGTTTc > 2:238992/1‑106 (MQ=255) tttGCTTCAACTTCGATTACGGTTACTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGTTTCAACCTCTCAATCGCTCAATGACCTGATTAACCCAGGCt > 2:56319/1‑139 (MQ=255) cTTCAACTTCGATTACGGTTACTGGGATAGAAACGCGGTCTTCTGTGAAGATACGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGTTTCAACCTCTCAATCGCTCAATGACCTGATTAACCCAGGCTGATc < 1:21146/139‑1 (MQ=255) cAACTTCGATTACGTTTACTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGTTTCAACCTCTCAATCGCTCAATGACCTGATTAACCCAGGCTGATCTg < 2:6090/138‑1 (MQ=255) cAACTTCGATTACGGTTACTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGTTTCAACCTCTCAATCGCTCAATGACCTGATTAACCCAGGCTGATCTg < 1:114945/138‑1 (MQ=255) aaCTTCGATTACGGTTACTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGTTTCAACCTCTCAATCGCTCAATGACCTGATTAACCCAGGCTGATCTGc < 2:387111/138‑1 (MQ=255) aCTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGTTTCAACCTCTCAATCGCTCAATGACCTGATTAACCCAGGCTGATCTg < 1:316722/121‑1 (MQ=255) aCTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGTTTCAACCTCTCAATCGCTCAATGACCTGATTAACCCAGGCTGATCTg > 2:316722/1‑121 (MQ=255) ttctGTGAAGATACGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGTTTCAACCTCTCAATCGCTCAATGACCTGATTAACCCAGGCTGATCTGCACGTCTACACCGGCAGCCAGATCCAGACGCATCagag > 1:250963/1‑139 (MQ=255) aCGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGTTTCAACCTCTCAATCGCTCAATGACCTGATTAACCCAGGCTGATCTGCACGTCTACACCGGCAGCCAGATCCAGACGCATCAGAGCATCAACGGttt > 1:76116/1‑139 (MQ=255) cGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGTTTCAACCTCTCAATCGCTCAATGACCTGATTAACCCAGGCTGATCTGCACGTCTACACCGGCAGCCAGATCCAGa < 1:208442/116‑1 (MQ=255) cGGGTCATCCCCACTTTTTTACCGACTAAACCAATCATTGTTTCAACCTCTCAATCGCTCAATGACCTGATTAACCCAGGCTGATCTGCACGTCTACACCGGCAGCCAGATCCAGa > 2:208442/1‑116 (MQ=255) | TAGCACCGGTGGTCACCTGAATAGCACGGTAGCCATCGTTAGCCAGGTCTTTAACCTGAGTAACGCGGTTTGCTTCAACTTCGATTACGGTTACTGGGATAGAAACGCCGTCTTCTGTGAAGATACGGGTCATACCCACTTTTTTACCGACTAAACCAATCATTGTTTCAACCTCTCAATCGCTCAATGACCTGATTAACCCAGGCTGATCTGCACGTCTACACCGGCAGCCAGATCCAGACGCATCAGAGCATCAACGGTTT > NZ_CP009273/3446123‑3446385 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 30 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |