| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,251,021 | A→G | pseudogene (773/986 nt) | BW25113_RS21020 → | DUF2713 domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,251,021 | 0 | A | G | 100.0% | 88.1 / NA | 25 | pseudogene (773/986 nt) | BW25113_RS21020 | DUF2713 domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (14/11); total (14/11) | |||||||||||
ACGCAGATTTATCAGAAACAGTGTATATTAATGAAAATAATGAGAGCTACCTGAAAGCTCAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGAGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTGGTGAATGAAGGAACGCTCGATCCTGATATTTTAAGCAAAATGCGAGATGCTGCACCACAATTAATTAGCTTCGCGAAGTCGTTTGACC > NZ_CP009273/4250891‑4251151 | aCGCAGATTTATCAGAAACAGTGTATATTAATGAAAATAATGAGAGCTACCTGAAAGCTCAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGaa > 2:51259/1‑139 (MQ=255) aGAAACAGTGTATATTAATGAAAATAATGAGAGCTACCTGAAAGCTCAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTAt < 2:36434/139‑1 (MQ=255) tgtATATTAATGAAAATAATGAGAGCTACCTGAAAGCTCAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGAt > 2:25640/1‑137 (MQ=255) tGAAAATAATGAGAGCTACCTGAAAGCTCAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGAt < 1:177269/127‑1 (MQ=255) tGAAAATAATGAGAGCTACCTGAAAGCTCAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGAt > 2:177269/1‑127 (MQ=255) aataatGAGAGCTACCTGAAAGCTCAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATgg < 2:329491/113‑1 (MQ=255) aataatGAGAGCTACCTGAAAGCTCAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATgg > 1:329491/1‑113 (MQ=255) aataatGAGAGCTACCTGAAAGCTCAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTgg > 2:105805/1‑139 (MQ=255) agCTACCTGAAAGCTCAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTGGTGAATGAAg > 1:375737/1‑139 (MQ=255) ccTGAAAGCTCAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGt > 2:7894/1‑116 (MQ=255) ccTGAAAGCTCAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGt < 1:7894/116‑1 (MQ=255) gAAAGCTCAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTGGTGAATGAAGGAACGCTc > 2:126304/1‑139 (MQ=255) cAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTg > 2:302696/1‑114 (MQ=255) cAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTg < 1:302696/114‑1 (MQ=255) cAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTGGTGAATGAAGGAACGCTCGATCCt > 1:420941/1‑138 (MQ=255) ttATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTGGTGAATGAAGGAACGCTCGATCCTGATATTTTAAGCa < 2:317522/139‑1 (MQ=255) aaCGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTGGTGAATGAAGGAACGCTCGATCCTGATATTTTAAGCAAAATGCg < 1:105805/139‑1 (MQ=255) aCGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTGGTGAATGAAGGAACGCTCGATCCTGATATTTTAAGCAAAATGCga < 1:316511/139‑1 (MQ=255) gTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTGGTGAATGAAGGAACGCTCGATCCTGATATTTTAAGCAAAATGCgaga < 2:421461/139‑1 (MQ=255) gTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTGGTGAATGAAGGAACGCTCGATCCTGATATTTTAAGCAAAATGCGAGATGCTGCACCACaa > 1:243841/1‑139 (MQ=255) aTGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTGGTGAATGAAGGAACGCTCGATCCTGATATTTTAAGCAAAATGCGAGATGCTGCACCACAATTAATTAGCTTcg > 1:62282/1‑139 (MQ=255) aTGAAGCGTCTGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTGGTGAATGAAGGAACGCTCGATCCTGATATTTTAAGCAAAATGCGAGATGCTGCACCACAATTAATTAGCTTcg > 2:123917/1‑139 (MQ=255) tGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATTTGGt > 1:407387/1‑58 (MQ=255) tGGCTGATGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTGGt < 2:407387/58‑1 (MQ=255) aTGGGGGGGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTGGTGAATGAAGGAACGCTCGATCCTGATATTTTAAGCAAAATGCGAGATGCTGCACCACAATTAATTAGCTTCGCGAAGTCGTTTGAcc < 2:62282/138‑1 (MQ=255) ggggggAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTGGTGAATGAAGGAACGCTCGATCCTGATATTTTAAGCAAAATGCGAGATGCTGCACCACAATTAATTAGCTTCGCGAAGTCGtt < 2:231273/130‑1 (MQ=255) ggggggAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTGGTGAATGAAGGAACGCTCGATCCTGATATTTTAAGCAAAATGCGAGATGCTGCACCACAATTAATTAGCTTCGCGAAGTCGtt > 1:231273/1‑130 (MQ=255) | ACGCAGATTTATCAGAAACAGTGTATATTAATGAAAATAATGAGAGCTACCTGAAAGCTCAGTTTGAAAAATTATCTCAACGTGATATGAAGAAGTACCTGGGAGAGATGAAGCGTCTGGCTGATGGGGGAGAAATGAATTTTGATGGCTATCTGGATAAGATGTCACATCTGGTGAATGAAGGAACGCTCGATCCTGATATTTTAAGCAAAATGCGAGATGCTGCACCACAATTAATTAGCTTCGCGAAGTCGTTTGACC > NZ_CP009273/4250891‑4251151 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |