Predicted mutation | ||||||
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evidence | seq id | position | mutation | annotation | gene | description |
RA | NZ_CP009273 | 1,136,234 | A→G | E249G (GAA→GGA) | flgL → | flagellar hook‑associated protein FlgL |
Read alignment evidence... | |||||||||||
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seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
* | NZ_CP009273 | 1,136,234 | 0 | A | G | 100.0% | 81.5 / NA | 23 | E249G (GAA→GGA) | flgL | flagellar hook‑associated protein FlgL |
Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (11/12); total (11/12) |
TGCCATCGCAGCCCTGAAAACGCCGGTCGCGGATAGCGAAGCGGATAAAGAAACCGCCGCTGCGGCGTTAGATAAAACCAACCGCGGACTGAAAAACTCGCTGAACAATGTGCTGACTGTTCGCGCGGAATTAGGCACGCAGCTGAACGAACTGGAGTCGCTGGATTCATTAGGTAGCGATCGCGCTTTAGGGCAAACGCAGCAGATGAGCGATCTGGTTGATGTGGACTGGAATGCAACTATTTCATCTTACATCATG > NZ_CP009273/1136106‑1136364 | tGCCATCGCAGCCCTGAAAACGCCGGTCGCGGATAGCGAAGCGGATAAAGAAACCGCCGCTGCGGCGTTAGATAAAACCAACCGCGGACTGAAAAACTCGCTGAACAATGTGCTGACTGTTCGCGCGGGATTAGGCa > 2:4743/1‑137 (MQ=255) tGCCATCGCAGCCCTGAAAACGCCGGTCGCGGATAGCGAAGCGGATAAAGAAACCGCCGCTGCGGCGTTAGATAAAACCAACCGCGGACTGAAAAACTCGCTGAACAATGTGCTGACTGTTCGCGCGGGATTAGGCa < 1:4743/137‑1 (MQ=255) tGCCATCGCAGCCCTGAAAACGCCGGTCGCGGATAGCGAAGCGGATAAAGAAACCGCCGCTGCGGCGTTAGATAAAACCAACCGCGGACTGAAAAACTCGCTGAACAATGTGCTGACTGTTCGCGCGGGATTAGGCACg > 2:5084/1‑139 (MQ=255) gCCGGTCGCGGATAGCGAAGCGGATAAAGAAACCGCCGCTGCGGCGTTAGATAAAACCAACCGCGGACTGAAAAACTCGCTGAACAATGTGCTGACTGTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAGTCg < 1:395855/139‑1 (MQ=255) gTCGCGGATAGCGAAGCGGATAAAGAAACCGCCGCTGCGGCGTTAGATAAAACCAACCGCGGACTGAAAAACTCGCTGAACAATGTGCTGACTGTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAGTCGCTgg < 2:255781/139‑1 (MQ=255) gTCGCGGATAGCGAAGCGGATAAAGAAACCGCCGCTGCGGCGTTAGATAAAACCAACCGCGGACTGAAAAACTCGCTGAACAATGTGCTGACTGTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAGTCGCTg > 2:363897/1‑138 (MQ=255) tCGCGGATAGCGAAGCGGATAAAGAAACCGCCGCTGCGGCGTTAGATAAAACCAACCGCGGACTGAAAAACTCGCTGAACAATGTGCTGACTGTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAg < 1:161462/131‑1 (MQ=255) tCGCGGATAGCGAAGCGGATAAAGAAACCGCCGCTGCGGCGTTAGATAAAACCAACCGCGGACTGAAAAACTCGCTGAACAATGTGCTGACTGTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAg > 2:161462/1‑131 (MQ=255) aaaGAAACCGCCGCTGCGGCGTTAGATAAAACCAACCGCGGACTGAAAAACTCGCTGAACAATGTGCTGACTGTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAGTCGCTGGATTCATTAGGTAGCGATcgcg > 2:390874/1‑139 (MQ=255) aaccaaccGCGGACTGAAAAACTCGCTGAACAATGTGCTGACTGTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAGTCGCTGGATTCATTAGGTAGCGATCGCGCTTTAGGGCAAACGCAGCAGATGAGCGAt < 2:88620/139‑1 (MQ=255) ccGCGGACTGAAAAACTCGCTGAACAATGTGCTGACTGTTCGCGCGGGATTAGGCa < 2:136016/56‑1 (MQ=255) ccGCGGACTGAAAAACTCGCTGAACAATGTGCTGACTGTTCGCGCGGGATTAGGCa > 1:136016/1‑56 (MQ=255) ccGCGGACTGAAAAACTCGCTGAACAATGTGCTGACTGTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAGTCGCTGGATTCATTAGGTAGCGATCGCGCTTTAGGGCAAACGCAGCAGATGAGCGATCTGGtt > 1:223892/1‑139 (MQ=255) aaaaaCTCGCTGAACAATGTGCTGACTGTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAGTCGCTGGATTCATTAGGTAGCGATCGCGCTTTAGGGCAAACGCAGCAGATGAGCGATCTGGTTGATGTGGAc < 1:390874/138‑1 (MQ=255) aaaaaCTCGCTGAACAATGTGCTGACTGTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAGTCGCTGGATTCATTAGGTAGCGATCGCGCTTTAGGGCAAACGCAGCAGATGAGCGATCTGGTTGATGTGGACt > 1:213541/1‑139 (MQ=255) cAATGTGCTGACTGTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAGTCGCTGGATTCATTAGGTAGCGATCGCGCTTTAGGGCAAACGCAGCAGATGAGCGATCTGGTTGATGTGGACTGGAATGCAACTAtt < 1:363897/139‑1 (MQ=255) cAATGTGCTGACTGTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAGTCGCTGGATTCATTAGGTAGCGATCGCGCTTTAGGGCAAACGCAGCAGATGAGCGATCTGGTTGATGTGGACTGGAATGCAACTAtt < 2:190791/139‑1 (MQ=255) cAATGTGCTGACTGTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAGTCGCTGGATTCATTAGGTAGCGATCGCGCTTTAGGGCAAACGCAGCAGATGAGCGATCTGGTTGATGTGGACTGGAATGCAACTAtt < 2:338368/139‑1 (MQ=255) gtgCTGACTGTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAGTCGCTGGATTCATTAGGTAGCGATCGCGCTTTAGGGCAAACGCAGCAGATGAGCGATCTGGTTGATGTGGACTGGAAt > 1:259659/1‑126 (MQ=255) gtgCTGACTGTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAGTCGCTGGATTCATTAGGTAGCGATCGCGCTTTAGGGCAAACGCAGCAGATGAGCGATCTGGTTGATGTGGACTGGAAt < 2:259659/126‑1 (MQ=255) tgCTGACTGTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAGTCGCTGGATTCATTAGGTAGCGATCGCGCTTTAGGGCAAACGCAGCAGATGAGCGATCTGGTTGATGTGGACTGGAATGCAACTATTTCATc < 2:213541/139‑1 (MQ=255) gTTCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAGTCGCTGGATTCATTAGGTAGCGATCGCGCTTTAGGGCAAACGCAGCAGATGAGCGATCTGGTTGATGTGGACTGGAATGCAACTATTTCATCTTAcatca > 1:296280/1‑139 (MQ=255) tCGCGCGGGATTAGGCACGCAGCTGAACGAACTGGAGTCGCTGGATTCATTAGGTAGCGATCGCGCTTTAGGGCAAACGCAGCAGATGAGCGATCTGGTTGATGTGGACTGGAATGCAACTATTTCATCTTACATCATg > 2:273958/1‑139 (MQ=255) | TGCCATCGCAGCCCTGAAAACGCCGGTCGCGGATAGCGAAGCGGATAAAGAAACCGCCGCTGCGGCGTTAGATAAAACCAACCGCGGACTGAAAAACTCGCTGAACAATGTGCTGACTGTTCGCGCGGAATTAGGCACGCAGCTGAACGAACTGGAGTCGCTGGATTCATTAGGTAGCGATCGCGCTTTAGGGCAAACGCAGCAGATGAGCGATCTGGTTGATGTGGACTGGAATGCAACTATTTCATCTTACATCATG > NZ_CP009273/1136106‑1136364 |
Alignment Legend |
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Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |