| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,594,535 | T→C | intergenic (‑69/+10) | lsrK ← / ← lsrR | autoinducer‑2 kinase/transcriptional regulator LsrR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,594,535 | 0 | T | C | 100.0% | 58.6 / NA | 16 | intergenic (‑69/+10) | lsrK/lsrR | autoinducer‑2 kinase/transcriptional regulator LsrR |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (9/7); total (9/7) | |||||||||||
TGCATCCAGCGCCATCAGGTAGTACTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCGGTAATAAGGTCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCG > NZ_CP009273/1594410‑1594664 | tGCATCCAGCGCCATCAGGTAGTACTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCGGTAATAAGGCCATGCAAATTTaa > 2:258368/1‑139 (MQ=255)tGCATCCAGCGCCATCAGGTAGTACTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCGGTAATAAGGCCATGCAAATTTaa > 2:77152/1‑139 (MQ=255) cgcCATCAGGTAGTACTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCGGTAATAAGGCCATGCAAATTTAACTACGTaa > 2:209114/1‑138 (MQ=255) tCAGGTAGTACTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCGGTAATAAGGCCATGCAAATTTaa > 1:287892/1‑125 (MQ=255) tCAGGTAGTACTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCGGTAATAAGGCCATGCAAATTTaa < 2:287892/125‑1 (MQ=255) aGGTAGTACTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCGGTAATAAGGCCATGCAAATTTAACTACGTAAAATcgccg < 1:77152/139‑1 (MQ=255) tagtaCTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCGGTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCgctg < 2:199167/139‑1 (MQ=255) gATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCGGTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGcc < 1:243719/139‑1 (MQ=255) ctgtctgtTCCTCTATACGTTCTCCATCATTCCCGGTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGt < 1:272477/104‑1 (MQ=255) ctgtctgtTCCTCTATACGTTCTCCATCATTCCCGGTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGt > 2:272477/1‑104 (MQ=255) tctATACGTTCTCCATCATTCCCGGTAATAAGGCCATGCAAATTTAACTACGTAAAAt > 1:343663/1‑58 (MQ=255) tctATACGTTCTCCATCATTCCCGGTAATAAGGCCATGCAAATTTAACTACGTAAAAt < 2:343663/58‑1 (MQ=255) tataCGTTCTCCATCATTCCCGGTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTAtttt > 2:377034/1‑139 (MQ=255) tctcCATCATTCCCGGTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTccccc > 2:240280/1‑139 (MQ=255) atTCCCGGTAATAAGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACg < 1:240280/138‑1 (MQ=255) taataaGGCCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCg > 1:83574/1‑138 (MQ=255) | TGCATCCAGCGCCATCAGGTAGTACTTTGATTCTGAAAGGGTAAAGAGTCGAGCCATTAGATTATCCTCGGCTTATGCGTTCTGTCTGTTCCTCTATACGTTCTCCATCATTCCCGGTAATAAGGTCATGCAAATTTAACTACGTAAAATCGCCGCTGCTGTGTCCTGATCGGTAACCAGTGCGTTGATATAACCGCCTTTCATTGCAGCGGCAATTGCTTCGGCTTTATTTTCTCCCCCTGCCACGCCAACCCG > NZ_CP009273/1594410‑1594664 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |