BRESEQ :: Evidence

New junction evidence
		seq id	position	reads (cov)	reads (cov)	score	skew	freq	annotation	gene	product
*	?	NZ_CP009273	314763 =	127 (3.710)	17 (0.500)	14/248	0.8	11.8%	coding (950/1326 nt)	rclA	reactive chlorine resistance oxidoreductase RclA
*	?	NZ_CP009273	376716 =	NA (NA)	17 (0.500)	14/248	0.8	11.8%	coding (28/444 nt)	BW25113_RS01855	transferase
Rejected: Frequency below/above cutoff threshold.

Only 100 of 177 total aligned reads displayed.

GCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTGCCC  >  NZ_CP009273/314625‑314898

gCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCtt                                                                                                                                         <  1:43708/139‑1 (MQ=255)

  tgtggtacgccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctat                                                                                                                                         >  2:651230‑M1/137‑137 (MQ=255)

    cAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCa                                                                                                                                       <  2:211638/137‑1 (MQ=255)

           tGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAAc                                                                                                                              <  1:462040/139‑1 (MQ=255)

           tGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAAc                                                                                                                              >  1:115394/1‑139 (MQ=255)

           tGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAAc                                                                                                                              <  2:341553/139‑1 (MQ=255)

           tGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAAc                                                                                                                              <  2:431000/139‑1 (MQ=255)

           tGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAAc                                                                                                                              >  1:653468/1‑139 (MQ=255)

               accaccTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACtcat                                                                                                                          <  2:422890/139‑1 (MQ=255)

               accaccTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACtca                                                                                                                           <  2:517029/138‑1 (MQ=255)

                     tGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAAc                                                                                                                              >  2:111810/1‑129 (MQ=255)

                     tGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAAc                                                                                                                              <  1:111810/129‑1 (MQ=255)

                       aaTATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTa                                                                                                                    <  2:503006/137‑1 (MQ=255)

                       aaTATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTa                                                                                                                    <  2:101749/137‑1 (MQ=255)

                       aaTATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTAc                                                                                                                   >  1:118336/1‑138 (MQ=255)

                           tCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGc                                                                                                              <  2:41849/139‑1 (MQ=255)

                              gCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagaca                                                                                                           >  1:519637‑M1/1‑113 (MQ=255)

                              gCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTa                                                                                                                    >  2:349652/1‑130 (MQ=255)

                              gCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTa                                                                                                                    <  1:349652/130‑1 (MQ=255)

                              gCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCgg                                                                                                            >  1:388590/1‑138 (MQ=255)

                               caccacTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTa                                                                                                          <  2:260382/139‑1 (MQ=255)

                                accacTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTaa                                                                                                         <  2:224216/139‑1 (MQ=255)

                                accacTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTaa                                                                                                         <  2:155680/139‑1 (MQ=255)

                                    ctctctctGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgt                                                                                                      >  2:476065‑M1/1‑107 (MQ=255)

                                    ctctctctGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAatcat                                                                                                     >  1:101707/1‑139 (MQ=255)

                                       tctctGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCAcc                                                                                                                                     >  2:392514/1‑104 (MQ=255)

                                            ggCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCAAGTGa                                                                                              >  2:2274/1‑138 (MQ=255)

                                             gCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcact                                                                                               <  1:583052‑M1/136‑39 (MQ=255)

                                                 gTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacc                                                                                          <  1:322030‑M1/137‑44 (MQ=255)

                                                       ctGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTaaa                                                                                  >  1:641847/1‑139 (MQ=255)

                                                               ccAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGcc                                                                          >  2:653478/1‑139 (MQ=255)

                                                                cAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgc                                                                         <  1:268802‑M1/139‑61 (MQ=255)

                                                                 tctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTCACCCAGTAACTCATCACGTa                                                                                                                    >  2:368811‑M1/74‑95 (MQ=255)

                                                                  aCCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccg                                                                       <  2:266016‑M1/139‑63 (MQ=255)

                                                                  aCCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCccgc                                                                       >  1:305657/1‑139 (MQ=255)

                                                                    ccTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCccgccg                                                                     >  1:106747/1‑139 (MQ=255)

                                                                       ggACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGt                                                                   >  1:249816/1‑138 (MQ=255)

                                                                        gACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagata                                                                 >  1:573606‑M1/1‑71 (MQ=255)

                                                                        gACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGt                                                                   <  2:221642/137‑1 (MQ=255)

                                                                        gACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTaa                                                                 >  1:242737/1‑139 (MQ=255)

                                                                        gACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTa                                                                  <  2:56799/138‑1 (MQ=255)

                                                                           aGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCATTACTACGTTTGCCTTCCCCCAGTAACTCATCCCGTCCAATGCGTTAATCATCCATTGATATGTAATTAAATTGCAGCCCGCCGGTAACAt                                                              <  1:596470/139‑1 (MQ=255)

                                                                             gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgc                                                                      <  2:377747‑M1/129‑64 (MQ=255)

                                                                             gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgc                                                                      >  1:377747‑M1/1‑66 (MQ=255)

                                                                             gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacc                                                                                          >  2:383153‑M1/1‑66 (MQ=255)

                                                                             gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaa                                                                                            <  2:197400‑M1/107‑42 (MQ=255)

                                                                             gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACtcatc                                                                                                                         >  1:366023/1‑78 (MQ=255)

                                                                             gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACaa                                                                                                                 <  1:480761/86‑1 (MQ=255)

                                                                             gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTaa                                                                                                         <  1:238623/94‑1 (MQ=255)

                                                                             gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATgtaagt                                                                                     >  1:346706/1‑114 (MQ=255)

                                                                             gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACAtct                                                            >  2:233144/1‑139 (MQ=255)

                                                                             gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACAtct                                                            >  2:487251/1‑139 (MQ=255)

                                                                             gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACAtct                                                            >  2:322507/1‑139 (MQ=255)

                                                                             gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACAtct                                                            >  2:95794/1‑139 (MQ=255)

                                                                             gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACAtct                                                            >  1:283554/1‑139 (MQ=255)

                                                                             gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACAtct                                                            >  1:497808/1‑139 (MQ=255)

                                                                             aggcGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattccc                                                            >  1:399546‑M1/2‑66 (MQ=255)

                                                                              ggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccg                                                           >  2:525551‑M1/1‑65 (MQ=255)

                                                                                cGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTcc                                                          >  2:443770/1‑138 (MQ=255)

                                                                                  gtgtCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACTTTTGCCTTCCCCCAGTACCTCATCACTTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCAt                                                       <  2:495701/139‑1 (MQ=255)

                                                                                  gtgtCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccaga                                                                                                             >  1:259873‑M1/1‑61 (MQ=255)

                                                                                  gtgtCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCAt                                                       >  2:601604/1‑139 (MQ=255)

                                                                                  gtgtCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCAt                                                       <  1:186230/139‑1 (MQ=255)

                                                                                   tgtCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCa                                                                                                                                       >  1:218961/1‑58 (MQ=255)

                                                                                     tCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCg                                                     <  1:180302/138‑1 (MQ=255)

                                                                                       atcacttatttaagtgatattggttgtctggagattcagggggccagtctaTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGcc                                                   <  2:564546‑M1/87‑1 (MQ=255)

                                                                                              cGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATAtt                                           <  2:562172/139‑1 (MQ=255)

                                                                                               ggAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacc                                            >  2:107874‑M1/1‑48 (MQ=255)

                                                                                                  aTAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcg                                       <  2:135003‑M1/139‑95 (MQ=255)

                                                                                                  aTAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcg                                       <  2:519637‑M1/139‑95 (MQ=255)

                                                                                                   tAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTg                                      <  1:141063/139‑1 (MQ=255)

                                                                                                     aGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgca                                     <  1:630188‑M1/138‑97 (MQ=255)

                                                                                                         attggttgtctggagattcagggggccagtctaTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCggtgg                                <  2:53922‑M1/106‑1 (MQ=255)

                                                                                                          caTTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCggtggt                               <  2:637840/139‑1 (MQ=255)

                                                                                                          caTTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCggtggt                               <  1:487251/139‑1 (MQ=255)

                                                                                                           aTTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcg                              >  2:352163‑M1/1‑36 (MQ=255)

                                                                                                           aTTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcg                              >  2:118485‑M1/1‑36 (MQ=255)

                                                                                                           aTTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTa                              >  2:364043/1‑139 (MQ=255)

                                                                                                                gtctggagattcagggggccagtctaTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGccc                                                                         <  1:432022‑M1/65‑1 (MQ=255)

                                                                                                                 tctggagattcagggggccagtctaTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCACATATTGTCTGCGGTGGTATGTAAt                        <  1:567445‑M1/114‑1 (MQ=255)

                                                                                                                 tctggagattcagggggccagtctaTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAAt                        <  2:175352‑M1/114‑1 (MQ=255)

                                                                                                                 tctggagattcagggggccagtctaTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAAt                        <  1:646654‑M1/114‑1 (MQ=255)

                                                                                                                  cGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTg                                      >  2:257795/1‑124 (MQ=255)

                                                                                                                            tactacGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAAc             <  1:465546/139‑1 (MQ=255)

                                                                                                                            agggggccagtctaTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTa                                                                  <  1:534650‑M1/72‑1 (MQ=255)

                                                                                                                               tacGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCggtggt                               >  1:124246/1‑118 (MQ=255)

                                                                                                                                 cGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCgg                                                                                                            >  1:573063/1‑39 (MQ=255)

                                                                                                                                 cGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCgg                                                                                                            <  2:573063/39‑1 (MQ=255)

                                                                                                                                 cGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACaa        >  2:409860/1‑139 (MQ=255)

                                                                                                                                   tttGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAAtt      >  1:462248/1‑139 (MQ=255)

                                                                                                                                    ttGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTg     >  1:198008/1‑139 (MQ=255)

                                                                                                                                      gCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacg   >  1:82498‑M1/1‑9 (MQ=255)

                                                                                                                                      gCCTTCACCCAGTAACTCATCACGTACAATGCGGTAatcatc                                                                                                    <  2:513184/42‑1 (MQ=255)

                                                                                                                                      gCCTTCACCCAGTAACTCATCACGTACAATGCGGTAatcatc                                                                                                    >  1:513184/1‑42 (MQ=255)

                                                                                                                                      gCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGccc                                                                         >  1:559167/1‑69 (MQ=255)

                                                                                                                                      gCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGccc                                                                         <  2:559167/69‑1 (MQ=255)

                                                                                                                                      gCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTGcc   >  1:210459/1‑139 (MQ=255)

                                                                                                                                      gCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTGcc   >  1:524278/1‑139 (MQ=255)

                                                                                                                                      gCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTGcc   >  1:404762/1‑139 (MQ=255)

                                                                                                                                      gCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTGcc   >  1:132525/1‑139 (MQ=255)

GCTACAGGCAATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTGCCC  >  NZ_CP009273/314625‑314898

Alignment Legend
Aligned base mismatch/match (shaded by quality score): `ATCG/ATCG` `< 3 ≤` `ATCG/ATCG` `< 27 ≤` `ATCG/ATCG` `< 35 ≤` `ATCG/ATCG` `< 38 ≤` `ATCG/ATCG` `< 39 ≤` `ATCG/ATCG`
Unaligned base: `atcg` Masked matching base: `atcg` Alignment gap: `‑` Deleted base: `‑`
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.