New junction evidence
  seq id position reads (cov) reads (cov) score skew freq annotation gene product
* ? NZ_CP009273 = 314767129 (3.770)33 (0.960) 23/248 0.3 20.4% coding (946/1326 nt) rclA reactive chlorine resistance oxidoreductase RclA
?NZ_CP009273 = 378046 NA (NA)pseudogene (262/264 nt) BW25113_RS23340 acetyltransferase

Only 100 of 180 total aligned reads displayed.

AATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTGCCCCGCGCT  >  NZ_CP009273/314634‑314904
                                                                                                                                     |                                                                                                                                         
  tGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCATCCCTGTACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAAc                                                                                                                                    <  1:244208/139‑1 (MQ=255)
  tGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAAc                                                                                                                                    <  2:431000/139‑1 (MQ=255)
  tGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAAc                                                                                                                                    >  1:115394/1‑139 (MQ=255)
  tGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAAc                                                                                                                                    <  1:462040/139‑1 (MQ=255)
  tGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAAc                                                                                                                                    >  1:637840/1‑139 (MQ=255)
  tGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAAc                                                                                                                                    >  1:653468/1‑139 (MQ=255)
  ccgtctgcgtttctccggccctaagacatcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTCACCCAGTAAc                                                                                                                                    >  1:213877‑M1/128‑139 (MQ=255)
      accaccTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACtcat                                                                                                                                >  2:141063/1‑139 (MQ=255)
       ccaccTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGTCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACtcatc                                                                                                                               <  2:422574/139‑1 (MQ=255)
         accTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCAc                                                                                                                             <  1:203125/139‑1 (MQ=255)
            tGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAAc                                                                                                                                    >  2:111810/1‑129 (MQ=255)
            tGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAAc                                                                                                                                    <  1:111810/129‑1 (MQ=255)
              aaTATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTa                                                                                                                          <  1:94349/137‑1 (MQ=255)
              aaTATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTa                                                                                                                          <  2:503006/137‑1 (MQ=255)
              aaTATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTAc                                                                                                                         >  1:512627/1‑138 (MQ=255)
              aaTATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTAc                                                                                                                         >  1:118336/1‑138 (MQ=255)
                  tCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGc                                                                                                                    <  2:41849/139‑1 (MQ=255)
                     gCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTa                                                                                                                          >  2:349652/1‑130 (MQ=255)
                     gCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTa                                                                                                                          <  1:349652/130‑1 (MQ=255)
                     gCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCgg                                                                                                                  >  1:388590/1‑138 (MQ=255)
                      caccacTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTa                                                                                                                <  2:260382/139‑1 (MQ=255)
                       accacTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTaa                                                                                                               <  2:224216/139‑1 (MQ=255)
                       accacTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTaa                                                                                                               <  1:56834/139‑1 (MQ=255)
                           ctctctctGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgt                                                                                                            >  1:127326‑M1/1‑107 (MQ=255)
                           ctctctctGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAatcat                                                                                                           >  1:101707/1‑139 (MQ=255)
                              tctctGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCAcc                                                                                                                                           >  2:392514/1‑104 (MQ=255)
                              tctctGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAatcatc                                                                                                          <  2:303490/137‑1 (MQ=255)
                              tcaatcatctgttctccaatgactagtctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTCACCCAGTAACTCATCACGTACAATGCGGTAatcatc                                                                                                          <  1:530834‑M1/38‑1 (MQ=255)
                                   ggCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCAAGTGa                                                                                                    >  2:2274/1‑138 (MQ=255)
                                    gCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcact                                                                                                     <  1:583052‑M1/136‑39 (MQ=255)
                                    gCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGata                                                                                                  <  1:573270/139‑1 (MQ=255)
                                        gTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacc                                                                                                <  1:322030‑M1/137‑44 (MQ=255)
                                              ctGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTaaa                                                                                        >  1:442372/1‑139 (MQ=255)
                                                      ccAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGcc                                                                                >  2:653478/1‑139 (MQ=255)
                                                        tctaaaaactagtattaagactatcacttatttaagtgatattggttgtctggagattcagggggccagtctaTCACCCAGTAACTCATCACGTa                                                                                                                          <  1:368811‑M1/22‑1 (MQ=255)
                                                         aCCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccg                                                                             <  2:266016‑M1/139‑63 (MQ=255)
                                                         aCCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCccgc                                                                             >  1:305657/1‑139 (MQ=255)
                                                           ccTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCccgccg                                                                           >  1:106747/1‑139 (MQ=255)
                                                              ggACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGt                                                                         >  1:249816/1‑138 (MQ=255)
                                                               gACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGt                                                                         <  2:221642/137‑1 (MQ=255)
                                                               gACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTa                                                                        <  2:56799/138‑1 (MQ=255)
                                                                  aGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCATTACTACGTTTGCCTTCCCCCAGTAACTCATCCCGTCCAATGCGTTAATCATCCATTGATATGTAATTAAATTGCAGCCCGCCGGTAACAt                                                                    <  1:596470/139‑1 (MQ=255)
                                                                    gggCGGTGTCATAAATACGGTATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATTACGTTCAATGCGGTAATCATCCTGTGATATGTAAGCAAATTGCAGCCCGCCGGTAACAtct                                                                  >  2:559656/1‑139 (MQ=255)
                                                                    gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCCGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACGATGCGGTAATCATACAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACAtcc                                                                  >  1:468802/1‑138 (MQ=255)
                                                                    gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattccc                                                                  >  1:265519‑M1/1‑66 (MQ=255)
                                                                    gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacc                                                                                                >  2:383153‑M1/1‑66 (MQ=255)
                                                                    gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacc                                                                                                <  1:383153‑M1/109‑44 (MQ=255)
                                                                    gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaa                                                                                                  <  2:197400‑M1/107‑42 (MQ=255)
                                                                    gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACtcatc                                                                                                                               <  2:366023/78‑1 (MQ=255)
                                                                    gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACaa                                                                                                                       >  2:480761/1‑86 (MQ=255)
                                                                    gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTaa                                                                                                               <  1:238623/94‑1 (MQ=255)
                                                                    gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATgtaagt                                                                                           <  2:346706/114‑1 (MQ=255)
                                                                    gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATgt                                                                                               >  2:646776/1‑110 (MQ=255)
                                                                    gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACAtct                                                                  >  2:233144/1‑139 (MQ=255)
                                                                    gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACAtct                                                                  >  2:95794/1‑139 (MQ=255)
                                                                    gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACAtct                                                                  >  1:483793/1‑139 (MQ=255)
                                                                    gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACAtct                                                                  >  1:519848/1‑139 (MQ=255)
                                                                    gggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACAtct                                                                  >  1:283554/1‑139 (MQ=255)
                                                                    aggcGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattccc                                                                  >  1:399546‑M1/2‑66 (MQ=255)
                                                                     ggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccg                                                                 >  2:525551‑M1/1‑65 (MQ=255)
                                                                     ggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccg                                                                 >  1:154840‑M1/1‑65 (MQ=255)
                                                                     ggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTa                                                                        >  2:465361/1‑132 (MQ=255)
                                                                     ggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTa                                                                        <  1:465361/132‑1 (MQ=255)
                                                                     ggCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACAtctc                                                                 >  2:35580/1‑139 (MQ=255)
                                                                       cGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTcc                                                                >  2:443770/1‑138 (MQ=255)
                                                                         gtgtCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACTTTTGCCTTCCCCCAGTACCTCATCACTTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCAt                                                             <  2:495701/139‑1 (MQ=255)
                                                                         gtgtCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCAt                                                             <  1:186230/139‑1 (MQ=255)
                                                                         gtgtCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCAt                                                             >  2:601604/1‑139 (MQ=255)
                                                                         gtgtCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCAt                                                             >  2:370615/1‑139 (MQ=255)
                                                                              atcacttatttaagtgatattggttgtctggagattcagggggccagtctaTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGcc                                                         <  2:564546‑M1/87‑1 (MQ=255)
                                                                              aTAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAAc                                                                                                                                    >  2:592202/1‑63 (MQ=255)
                                                                                    aCGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacc                                                  >  1:139995‑M1/1‑50 (MQ=255)
                                                                                      ggAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTg                                                >  1:515650/1‑139 (MQ=255)
                                                                                         aTAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcg                                             <  2:519637‑M1/139‑95 (MQ=255)
                                                                                         aTAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcg                                             <  2:135003‑M1/139‑95 (MQ=255)
                                                                                              atattggttgtctggagattcagggggccagtctaTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCgg                                         >  1:564546‑M1/36‑138 (MQ=255)
                                                                                               cacaTTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCggtg                                       <  2:515650/139‑1 (MQ=255)
                                                                                                attggttgtctggagattcagggggccagtctaTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCggtgg                                      <  2:53922‑M1/106‑1 (MQ=255)
                                                                                                 caTTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCggtggt                                     <  1:487251/139‑1 (MQ=255)
                                                                                                  aTTTTTCCGATCATCAGTACTACGTTTGCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcg                                    >  2:118485‑M1/1‑36 (MQ=255)
                                                                                                       gtctggagattcagggggccagtctaTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGccc                                                                               <  1:432022‑M1/65‑1 (MQ=255)
                                                                                                        tctggagattcagggggccagtctaTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAAt                              <  2:175352‑M1/114‑1 (MQ=255)
                                                                                                        tctggagattcagggggccagtctaTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAAt                              <  1:646654‑M1/114‑1 (MQ=255)
                                                                                                         cGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTg                                            >  2:257795/1‑124 (MQ=255)
                                                                                                         cGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTg                                            <  1:257795/124‑1 (MQ=255)
                                                                                                                        cGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCgg                                                                                                                  <  2:573063/39‑1 (MQ=255)
                                                                                                                        cGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACaa              >  2:409860/1‑139 (MQ=255)
                                                                                                                           ttGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTg           >  1:198008/1‑139 (MQ=255)
                                                                                                                             gCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacg         >  1:625751‑M1/1‑9 (MQ=255)
                                                                                                                             gCCTTCACCtggatttgcccctatatttccagacatctgttatcacttaacccattacaagcccgctgccgcagatattcccgtggcgagcgataacccagcgcactatgcggatgccattcgttataatgctcgaacg         >  1:82498‑M1/1‑9 (MQ=255)
                                                                                                                             gCCTTCACCCAGTAACTCATCACGTACAATGCGGTAatcatc                                                                                                          <  2:513184/42‑1 (MQ=255)
                                                                                                                             gCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGccc                                                                               >  1:559167/1‑69 (MQ=255)
                                                                                                                             gCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGccc                                                                               <  2:559167/69‑1 (MQ=255)
                                                                                                                             gCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTGcc         >  2:337540/1‑139 (MQ=255)
                                                                                                                             gCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTGcc         >  1:331592/1‑139 (MQ=255)
                                                                                                                             gCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTGcc         >  2:104834/1‑139 (MQ=255)
                                                                                                                             gCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTGcc         >  1:132525/1‑139 (MQ=255)
                                                                                                                              ccTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTGccc        <  1:409860/139‑1 (MQ=255)
                                                                                                                                  cACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTGCCCcg      <  1:364043/137‑1 (MQ=255)
                                                                                                                                   aCCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTGCCCcgcg    <  2:132525/138‑1 (MQ=255)
                                                                                                                                     |                                                                                                                                         
AATGTCACCACCTGAATATCAGCACCACTCTCTCTGGCTTGTTCTTCTGTCATACCAACCCTGGACAGGGGCGGTGTCATAAATACGGAATAAGGCACATTTTTCCGATCATCAGTACTACGTTTGCCTTCACCCAGTAACTCATCACGTACAATGCGGTAATCATCCAGTGATATGTAAGTAAATTGCAGCCCGCCGGTAACATCTCCCATCGCCCAAATATTGTCTGCGGTGGTATGTAATCGCTTGTCAACGACAATTGCCCCGCGCT  >  NZ_CP009273/314634‑314904

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 17 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑
Reads not counted as support for junction
read_name Not counted due to insufficient overlap past the breakpoint.
read_name Not counted due to not crossing MOB target site duplication.