| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 324,514 | 0 | T | G | 40.8% | 99.2 / 44.1 | 71 | T178P (ACC→CCC) | betI | transcriptional regulator BetI |
| Reads supporting (aligned to +/- strand): ref base T (10/32); new base G (29/0); total (39/32) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 1.15e-11 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GTGCGACCGCTGGTGGCGGAGGTATAACCACCATGTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCGCTTCCTGTGCCTGTTCGCGCGGCAATTCGCGACGAAACTCGCTCACCAGATTCGACAGC > NZ_CP009273/324377‑324647 | gTGCGACCGCTGGTGGCGGAGGTATAACCACCATGTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGtt < 1:470258/139‑1 (MQ=255) gCGACCGCTGGTGGCGGAGGTATAACCACCATGTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGGAT‑T‑AGC‑GC‑GGGgttt > 1:481964/1‑139 (MQ=255) gacagggTATAACCACCATGTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTg < 1:110854/134‑1 (MQ=255) gCGGAGGTATAACCACCATGTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTg < 2:656873/139‑1 (MQ=255) gCGGAGGTATAACCACCATGTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTg < 2:330163/139‑1 (MQ=255) gCGGAGGTATAACCACCATGTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTg < 2:287611/139‑1 (MQ=255) gCGGAGGTATAACCACCATGTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTg < 1:395962/139‑1 (MQ=255) accaTGTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGG‑CA‑GGGGAT‑T‑AGG‑GC‑GGGGTTTTTTCAGCGGGTTTTCGCCCCGAGCcgc > 2:271200/1‑139 (MQ=255) caTGTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CC‑GGGGAT‑T‑GGG‑GG‑GGGGGTTTTTCTGCCGGTTGTCGCTCAGAGCcccgc > 2:386762/1‑139 (MQ=255) caTGTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCcgcgc < 1:271200/139‑1 (MQ=255) caTGTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGG‑CC‑GGGGAT‑T‑AGA‑GC‑GGGGGTTTTTTAGCGGGTTTTCGCGCCGGGCcgcgc > 2:141703/1‑139 (MQ=255) caTGTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGG‑CA‑GGGGAT‑T‑AGG‑GC‑GGGGTTTTTTCAGCGGGTTGGCGCCCCGAGCcgccc > 2:155410/1‑137 (MQ=255) caTGTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGG‑CA‑GGGGAA‑T‑AGA‑GC‑GGGGGTTTTTCAGAGGGTTGTCGCCCAGCACcgcgc > 2:20301/1‑139 (MQ=255) aTGTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGG‑GC‑GGGAAA‑T‑AGCGGG‑GGGTTTTTTCTAGGGGTTT‑CCGCTCAGAGCcgcgcg > 1:638429/1‑139 (MQ=255) gTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTGGCCGCTCAGAGCcgcgcg < 1:250925/137‑1 (MQ=255) aaGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGtt < 1:278647/98‑1 (MQ=255) aaGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATa < 1:425851/138‑1 (MQ=255) aaGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATa < 1:627462/138‑1 (MQ=255) aaGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCCCAGAGCCGCGCGCAGCCATa < 2:596557/138‑1 (MQ=255) gctgctGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGG‑CA‑GGGAAA‑T‑AAC‑GC‑GGGGTTTTTTCAGCGGGTTGGCGCCCCCAGCCGCGGGCGGGCATAATc > 2:570724/1‑139 (MQ=255) tgctgTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGG‑CC‑AGGGAT‑T‑AAC‑GC‑GGGGTTTTTTCCGCGGGTTTCCCCCCCGAACCGCGCGCCGCCCTAATACa > 1:197510/1‑139 (MQ=255) tgctgTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGG‑CA‑GGGGAA‑T‑TGG‑GC‑GGGGTGTTTTCAGCGGTTTGGCGGCCCGAGGCGCGGGGAGCCATAAAcc > 1:662340/1‑138 (MQ=255) ctgTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGTGCG‑GGGAATAA‑AGC‑GG‑GGGTTTT‑TCCGCGGGTTTGCGGC‑CCGAGGCGCCCGGGGCCACAATccca > 2:544724/1‑136 (MQ=255) ctgTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CG‑GGGGAA‑T‑AGC‑GCGGGGTTTTTTCCAAGGGTTTG‑TGCCCCGCGCCGCGCGCAGCCAGaaaacctc > 2:431730/1‑133 (MQ=255) ctgTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGGGT‑T‑AGC‑GC‑GGGGTTTTTTCTGCGGGTTGCCGCTCCGCGCCGCGCCCAGCCAAAATCCat > 2:42513/1‑138 (MQ=255) ctgTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGGAT‑T‑AGC‑GG‑GGGGGTTTTTCAACGGGTTGGCGCGCCCAGGGGCGCGCAGGCCTAATACaa > 2:153765/1‑137 (MQ=255) ctgTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGGAT‑T‑AGC‑GC‑GGGGTTTTTTCACCGGATTGCCGCCCAGAGCCGCGCGCCGCCCAAATCCat > 2:116956/1‑138 (MQ=255) ctgTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGGAT‑T‑AAC‑GC‑GGGGTTTTTTCAACGGTTTGTCGCCCAGAGCCGCGCGCCGCCACAAACCatc > 2:269959/1‑139 (MQ=255) ctgTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGGAA‑T‑TGC‑GG‑GGGGTTTTTTCAACGGTTTTCCGCCCAGAGCCGCGCGCAGCCATAATCCctc > 1:556055/1‑139 (MQ=255) ctgTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAA‑T‑AGG‑GC‑GGGGTTTTTTCAGCGGGTTTCCCCGCAGAGCCGCGCGCCGCCAAAATCCat > 1:15611/1‑138 (MQ=255) ctgTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGG‑CA‑GGGGAA‑T‑TGC‑GC‑GGGGTTTTTTCCGCGGGGGTGCGCTCAGAGGCGCGCGCAGCCCTAAttcct > 1:364341/1‑134 (MQ=255) ttCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCatcaa < 1:51139/138‑1 (MQ=255) tCTGTCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGTTAGATGCGGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCatcaat < 1:233701/138‑1 (MQ=255) ccATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAgcg < 1:570724/139‑1 (MQ=255) gacagcATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGcc < 1:603913/134‑1 (MQ=255) cGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGG‑CC‑GGGGAT‑T‑AGG‑GG‑GGGGTTTTTTCAGCGGGTTGTCCCCCACAGGCGCGCGCCGCCACAAACCCTCAATTAGCGCGGcc > 1:199727/1‑139 (MQ=255) cGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGG‑CA‑GGGGAA‑T‑TGC‑GC‑GGGGTTTTTCCAGCGGGTTGCCGCCCCGAGCCGCGCGCAGCCCTAAAACCTCAATAACCGCGGcc > 1:221867/1‑139 (MQ=255) cGGGACAGCACGTCTCCGCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGTTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGcc < 2:605287/139‑1 (MQ=255) ggATATCACGTCCCCGCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTTTCCAGCGTTTTGCCCCTCAGCGCCGCGCCCAGCCATAATCCATCAATCAGCGCGGctct < 2:364341/139‑4 (MQ=255) aTCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CAGGGGAAT‑TGAGC‑GG‑GGGTTTT‑TCC‑GCCGTTTGCCGCCCACAGCCGCGCGCCGACATAAACCATCAATCAGCGCGGCCCGGCCg > 2:647127/1‑139 (MQ=255) cACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGGAT‑T‑AGG‑GC‑GGGGTTTTTTCCGCGGGTTTGGGCTCAGAGCCGCGCGCAGCCCTAAACCATCAATTCACGCGGGCAGGGCg > 2:529947/1‑137 (MQ=255) cACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGG‑CC‑GGGGAT‑T‑AAG‑GC‑GGGGGTTATTCAACGGTGTGCCGCCCCGAGCCGCGCGCGGCCCAAATACCTCAATCAGCGCCGCCACGCCg > 2:207449/1‑137 (MQ=255) cACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGG‑CA‑GGGGAT‑T‑GAC‑GG‑GGGGTTTTTTCAGCCGGTTGCCGCTCCGAGGCGCGCGCAGCCCACAACACTCAAACAACGCGGCCAGGCCggc > 2:548033/1‑137 (MQ=255) cACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGG‑CA‑GGGGAA‑T‑AGA‑GC‑GGGGTTTTTTCAGCCGGTTGCCGCCCAGAGCCGCGCGCGGCCCTAATCCATCAATCCACCcggcccggcccgc > 2:600033/1‑136 (MQ=255) aCGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGG‑GA‑GGGGAT‑T‑AGA‑GG‑GGGGTTTTTTCAGCGGGTTTGTGCCCCGCGCCCCGCGGCGCCAAAAAACATCAATCAACGCGGCCCgggccgag > 2:201625/1‑133 (MQ=255) gacagcGGTTAATCGGTGGTTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCg < 1:375347/134‑1 (MQ=255) ctcctcGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CC‑GGGGAA‑T‑AGC‑GC‑GGGGTTTTTTCCGCGGGTTTTCGCCCCCAGCCGCGCGCAGCCCCAATCCATCAATCACCGCGGCCCCGCCGCCGcccc > 2:45042/1‑138 (MQ=255) ctcctcGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCg < 1:419055/139‑1 (MQ=255) gcctcGGTTAATCGGTGGGTAGATGCTGTTTGATAAAGGGCCGGGC‑CA‑GGGAAT‑G‑AGC‑GC‑GGTTTTTATCCAGTGGTTTGCCCCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCg < 1:303125/137‑1 (MQ=255) ccctcGTTTAATGGGTGGGTAGATGCTGAGTGATAAAGGGGCGGGG‑CA‑GGGAAT‑T‑AGC‑GC‑TGGTTTTATCCAGCGGTTTGCCCCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCg < 2:300502/137‑1 (MQ=255) cctcGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTACCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCGCt < 2:52336/139‑1 (MQ=255) cctcGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGGGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GG‑GGGTTTTATCCAGCGGTTGGCCGCTCAGAGCCGCGGGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCGCt < 2:52352/139‑1 (MQ=255) ctcGGTTAATCGGTGGGTAGATGTTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGTTTTGCCGCCCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCAAGGCCGTAGCCCg < 1:439162/136‑1 (MQ=255) ctcGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCg < 1:386762/136‑1 (MQ=255) ctcGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTACCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCg < 2:78606/136‑1 (MQ=255) cGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑GA‑AGGGGA‑T‑AGG‑GC‑GGGGTTTTTTCCGCGGGTTTGCGCGCCGAGGCCCGCGCCGCCCCAAATCAACAAACAGCCACGCCCGGCCGGAGccccgtctc > 2:324783/1‑133 (MQ=255) ggTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCGCTTc < 1:529947/137‑1 (MQ=255) aaTCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCGCTTCCtgtg < 1:141703/138‑1 (MQ=255) aTCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGG‑CA‑GGGGAT‑T‑AGG‑GG‑GGGGGTTTTTTAGCGGGTTGTCGCCCCGAGGCGCCCGCCGCCCAAAACAATCAAACAACGCGGGCCGGGCGGAGCCCGCCTccctgggc > 2:419055/1‑133 (MQ=255) tGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGGAA‑T‑AGC‑GC‑GGGGTTTTTTCAGCGGGTTGCCGCCCCGAGCCGCGCGCAGCCATAATCCATCAATCAACGCGGCCCGGCCGGAGCCCGCTTCCCGTGCCTGttt > 1:548900/1‑138 (MQ=255) tGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGA‑GCGGGGTTTTTTCCGGGGGTTT‑CCGGTCCGAGAGGCGCGCAGCCCCAAACCATCAATCAGCGCGGGCAGGCCGCAGGCCGGTTCCCGCGccccgtc > 2:375347/1‑134 (MQ=255) gTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCACCCGCAGCCATAATCCATCACTCAGCGCGGCCAGGCCGTAGCCCGCTTCCTGTGCCTGTTcgcg < 1:240892/139‑1 (MQ=255) aGTGATAAAGTGGCGGGT‑CA‑GGGGAG‑T‑AGG‑GC‑GGGGTTTTTTCAGCGGTTTTTCGCCCAGAGCCGCGCGCCGCCATAATCCCTCAATCAAAGCGGCCCGGGCGGAGCCCGCCTCCTGCGCCCGTTCTCGCGGCCATTcg > 2:129321/1‑139 (MQ=255) aGTGATAAAGTGGCGGGG‑CA‑GGGGAA‑T‑AGC‑GC‑GGGGGTTTTTCCGCGGGTTGTCGCCCCGAGCCGCGCGCCGCCCCAATACATCAATCAACGCGGCCCGGCCGCAGCCCCCCTCCCTTGCCTGTTCGCGCGGCCAtttc > 2:57121/1‑137 (MQ=255) aaGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCGCTTCCTGTGCCTGTTCGCGCGGCAATTCGCGACGaa < 2:638429/139‑1 (MQ=255) tGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCGCTTCCTGTGCCTGTTCGCGCGGCAATTCGCGACGAAACt < 1:129321/139‑1 (MQ=255) gCGGGG‑CA‑AGGGAA‑T‑AAC‑GC‑GGGGTTTTTCCAGCGGGTTGTCGCTCAGAGCCGCGCGCAGCCCTAAACCATCAAACAACGCGGCCAGGCCCGAGCCCCCTTCCTGTGCCCGTTCGCGCGGCAATTTGCGACGAAAcacc > 2:198505/1‑136 (MQ=255) a‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCGCTTCCTGTGCCTGTTCGCGCGGCAATTCGCGACGAAACTCGCTCAcc < 1:598621/138‑1 (MQ=255) t‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCGCTTCCTGTGCCTGTTCGCGCGGCAATTCGCGACGAAACTCGCTCACCAGATTCGa > 2:395114/1‑139 (MQ=255) aGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCGCTTCCTGTGCCTGTTCGCGCGGCAATTCGCGACGAAACTCGCTCACCAGATTCGa > 2:515468/1‑138 (MQ=255) gc‑gc‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCGCTTCCTGTGCCTGTTCGCGCGGCAATTCGCGACGAAACTCGCTCACCAGATTCGa > 2:550848/1‑137 (MQ=255) gc‑gc‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCGCTTCCTGTGCCTGTTCGCGCGGCAATTCGCGACGAAACTCGCTCACCAGATTCGACa < 1:57121/139‑1 (MQ=255) c‑gGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCGCTTCCTGTGCCTGTTCGCGCGGCAATTCGCGACGAAACTCGCTCACCAGATTCGACAGc > 1:558217/1‑138 (MQ=255) c‑gGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCGCTTCCTGTGCCTGTTCGCGCGGCAATTCGCGACGAAACTCGCTCACCAGATTCGACAGc > 2:389682/1‑138 (MQ=255) | GTGCGACCGCTGGTGGCGGAGGTATAACCACCATGTATATAAAGCTGCTGTTCTGCCATTCGGGACATCACGTCTCCTCGGTTAATCGGTGGGTAGATGCTGAGTGATAAAGTGGCGGGT‑CA‑GGGAAT‑T‑AGC‑GC‑GGGTTTTATCCAGCGGTTTGCCGCTCAGAGCCGCGCGCAGCCATAATCCATCAATCAGCGCGGCCAGGCCGTAGCCCGCTTCCTGTGCCTGTTCGCGCGGCAATTCGCGACGAAACTCGCTCACCAGATTCGACAGC > NZ_CP009273/324377‑324647 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 25 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |