| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 353,591 | 0 | T | C | 42.1% | 106.4 / 27.1 | 76 | K271E (AAA→GAA) | cynR | transcriptional regulator CynR |
| Reads supporting (aligned to +/- strand): ref base T (32/12); new base C (0/32); total (32/44) | |||||||||||
| Fisher's exact test for biased strand distribution p-value = 9.66e-12 | |||||||||||
| Kolmogorov-Smirnov test that lower quality scores support variant p-value = 1.00e+00 | |||||||||||
| Rejected as consensus: Frequency below/above cutoff threshold. | |||||||||||
GATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCG > NZ_CP009273/353453‑353725 | gATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTAttttt > 1:67689/1‑139 (MQ=255)gATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTAttttt > 2:150743/1‑139 (MQ=255)gATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTAttttt > 1:16107/1‑139 (MQ=255) aTAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑c > 1:330023/1‑139 (MQ=255) cGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑ccgccg > 1:120373/1‑139 (MQ=255) cGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑ccgccg > 2:279633/1‑139 (MQ=255) gTAGCGCATCAGGAAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGG‑TGTCTGCCAGCTATTTTT‑Ccgccgc < 1:139225/139‑1 (MQ=255) tAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑Ccgccgc > 2:523155/1‑138 (MQ=255) tAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTGCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑Ccgccgc > 2:546885/1‑138 (MQ=255) gcgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGcaa > 1:563015/1‑138 (MQ=255) gcgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGcaa > 1:185802/1‑138 (MQ=255) cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGcaac > 2:488181/1‑138 (MQ=255) cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGcaac > 2:249064/1‑138 (MQ=255) cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGcaac > 2:372159/1‑138 (MQ=255) cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGcaac > 2:390433/1‑138 (MQ=255) cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGcaac > 2:619171/1‑138 (MQ=255) cAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAAcc > 1:85115/1‑139 (MQ=255) cAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAAcc > 2:485319/1‑139 (MQ=255) cAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAAcc > 2:124966/1‑139 (MQ=255) cAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAAcc > 2:19830/1‑139 (MQ=255) atcccAGCCGCAGCCCTGTGCCGGCGGCCACCGTGTTTCATTCCCCCA‑AACACCCGCGCTTTTACCCAACGCCA‑TGTGAAAAAATGCCTTC‑GGGGCGGC‑TGTCTGCCAGCTATTTTC‑CCGCCGCAAAAAAACCGCCGtt < 1:249064/136‑1 (MQ=255) ttCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAAC‑AAACCGCCGTtct > 1:364519/1‑139 (MQ=255) tCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑ccgc < 2:547346/119‑1 (MQ=255) tCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑ccgc > 1:547346/1‑119 (MQ=255) ccAGCCGCAGCCCTGTGCCAGCGGCTCCCGTGATTCATTCCCCCC‑AACACCCGCGCTTTTACCCACCCCCA‑TGTGAAAAAATGCCTTC‑GCGGCGGC‑TGTCGGCCAGTTATTTTC‑CCGCCGCAA‑AAAACCGCCGTtctc < 2:364519/138‑1 (MQ=255) ccACCCGCAGCCCTGTGTCAGCGGCTACCGTTTTTCATTCCCGCC‑AACACCCGCGCTTTTACCCACCCCCA‑TGTGCAAAAATGCCTTC‑GGGGCGGC‑TGTCTGCCAGCTTTTTTT‑CCGCCACAAAAAAACCGCCGTtctc < 1:619171/139‑1 (MQ=18) cgCCGCAGCCCTGTGTCAGCGCCTCCCGTTATTCATCCCCCCC‑AACACCCGCGCTTTTACCCACCCCCT‑TGTAAAAAAATCCCTCC‑GGGGGGGC‑TTTCTGCCGGTTTTTTTC‑CCGCCGCAAAAAAACCGCCGTtctctc < 2:563015/138‑1 (MQ=255) aGCCGCAGACTTGTGTCAGGGCCTACCGTAATTCATTTCCGCC‑AACACCCGCCCATTTACCCACCGCCA‑TGTGAAAAAATCCCTGC‑GCGGCGGC‑TTTCTGCCAGTTATTTTT‑CCGCCGCAACAAAACCGCCGTtctctc < 1:124966/139‑1 (MQ=255) gCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTtctctc > 2:658513/1‑138 (MQ=255) cGCAGCCTTGTGCCAGCGGCTACCGTATTTCATTCCCGCA‑ACCACCCGCGCTTTTACCCACCGCCT‑GGTGAAAAAATGCCTCC‑GCGGCGGC‑TGTCGGCCAGCTTTTTTC‑CCGCCGCAACAAAACCGCCGTTCTCTCCag < 1:483619/139‑1 (MQ=255) gCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCTTTTACCCACCCCCA‑TGTGAAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTC‑CCGCCACAACAAAACCGCCGTTCTCTCCagt < 1:152471/139‑1 (MQ=21) gtgtCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCgg > 2:374570/1‑139 (MQ=255) tgtCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCggg > 2:74391/1‑139 (MQ=255) gCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCggggggag > 2:416202/1‑135 (MQ=255) gCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCggggg > 2:640411/1‑135 (MQ=255) cGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCgggggacag > 1:263712/1‑134 (MQ=255) tACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGGAGAGaa > 1:13112/1‑138 (MQ=255) ccggttaTTCATCCCCGCC‑AACACCCCCGC‑TTTCTCCCACCCCATTGGGAAAAAGTCCCTCC‑GCGCCGGC‑TTTCGCCAATTTATTTTC‑CCGCCAAAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAAt < 2:521299/133‑1 (MQ=255) ccttGATTCTTTCCCCCC‑AACCCCCTCGCTTTTACCCACCCCCA‑TTTGCAAAAATCCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGaaa < 1:637753/134‑1 (MQ=255) accgtatttatttCCCCCAAACACCCGCTCTTTTACCAAACCCCA‑GGGGAAAAAAGGCCTTG‑GGGGCGGC‑TGTCGGCCAGTTTTTTTC‑CCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAAt < 1:395045/134‑1 (MQ=255) taTTCTTTCCCCCC‑ACCACCCGCGCTTTTCCCCAACGCTT‑TGGGAAAAAGTGCCTTC‑GCGGGGGC‑TGTCTGCCAGTTTTTTTC‑CCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCt < 2:557114/137‑1 (MQ=255) aTTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGATATTTTT‑CCGCCGCAACAAAAACGCCGTTCTCTCCAGTAGTGGCGGGGGACGAGgaaaaacat > 2:146731/1‑132 (MQ=25) cATTCCCGCA‑AACACCCGCGCATTTATCCACCGCCA‑TGTGCAAAAAGGCCTCC‑GCGGCGGC‑TGTCTGCCAGCTATTTTC‑CCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTaa < 1:523155/138‑1 (MQ=255) aTTCCCGCC‑ACCCCCCGCGCTTTTACCCACCGCCA‑TGTGAAAAATTGCCTTG‑GCGGCTGC‑TGTCTGCCACTTATTTTC‑CCGCCACAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGc < 2:17709/139‑1 (MQ=255) aTTCCCGCC‑AACACCCGCGCATTTACCCAACGCCA‑TGTGAAAAAAGGCCTTG‑GGGGGGGC‑TGTCTGCCAGTTTTTTTT‑CCGCCGCAAAAAAGCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGc < 1:485319/139‑1 (MQ=255) tcccccc‑AACAACCCCGCATTTCTCCACCGCCA‑TGTGAAAAAATGCCTTC‑GCGGCGGC‑TTTCTGCCAGTTTTTTTC‑CCCCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAg < 1:46559/131‑1 (MQ=255) tcccGCC‑AACACCCCCCCTTTTACCCCACGCCT‑TGTGCAAAAATGCCTCC‑GCGGCGGC‑TGCCTGCCATTTTTTTTC‑CCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGc < 2:120373/135‑1 (MQ=255) cccc‑accaCCCGCGCTTTTACCCACCCCCT‑TGTGAAAAAATGCCTCC‑GCGGCGGC‑TTTCTGCCAGTTATTTTC‑CCGCCGAAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTc < 1:414614/137‑1 (MQ=255) cccc‑AACACCCCCGCTTTTACCCACCCCCA‑TGTG‑AAAAATGCCCTCGGGGGGGGC‑TGCCTGCCAGTTTTTTTC‑CCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTc < 2:330023/137‑1 (MQ=255) acaccCGCGCTTTTACCCAACGCCA‑TGTGCAAAAATGCCTGC‑GCGGCGGC‑TGTCGGCCAGCTTTTTTC‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCAtgtt < 1:390433/139‑1 (MQ=38) aacCGCGCTTTTATCAACCGCCA‑TTTGAAAAAATCCCTTG‑GCGGCGGC‑TGTCTGCCAGTTATTTTT‑CCGCCGAAACAAATCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCAtgttgt < 1:640411/139‑1 (MQ=255) gcgcATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGGAGAGAAAAAACATTTAACCCCTCCtgtttttgtc > 1:407103/1‑133 (MQ=25) tacccACCGCCT‑TGTCCAAAAATGCTTTC‑GCGGCGGC‑TGTCTGCAAGTTATTTTC‑CCCCCCCAAAAAATCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCg < 1:159379/135‑1 (MQ=255) tacccACCGCCA‑TGTGAAAAAAGGCCTCC‑GGGGCGGC‑TGCCTGCCAGCTTTTTTC‑CCGCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCg < 2:69722/135‑1 (MQ=255) tacccAACGCTG‑TGTAAAAAAAGGCCTCC‑G‑GGCGGCTTTTCTGCC‑GCTTTTTTTCCCGCCAAAAAAAACCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCg < 2:273372/135‑1 (MQ=255) tacccAACCCCT‑TGTAAAAAAATGCCTCC‑GCGGCGGT‑TGTCTGCCAGTTTTTTTC‑CCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCg < 1:321323/135‑1 (MQ=255) ccAACTCCT‑TGTCAAAAAATGCCTCC‑GCGGCGGC‑TGTCTGCCAGCTTTTTTC‑CCGCCACAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgctgc < 1:174510/139‑1 (MQ=255) gCCA‑TGTGAAAAAATGCCTTC‑GCGGCGCC‑TTTCTGCCAGTTATTTTC‑CCCCCGAAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTa < 1:416202/139‑1 (MQ=255) gcattgtcCAAAAATCCCTTC‑GGGGCGGT‑TGTCTGCCAGTTATTTTT‑CCCCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTa < 1:640189/135‑1 (MQ=255) caa‑TGTACAAAAACGCCTTC‑GCGGCGGC‑TGTCGGCCACTTATTTTT‑CCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTaa < 1:150743/137‑1 (MQ=255) gtccAAAATTCCCTTC‑CGGGCGGT‑TGTCTGCCAG‑TATTTTTCCCGCCCAACCAAATCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACaa < 1:619934/135‑1 (MQ=255) tccAAAAATCCCTCC‑GGGGGGGT‑TGTCTGCCAGTTATTTTC‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAAt < 1:135522/136‑1 (MQ=255) gaaaaaaGCCCTTC‑GCGGCGGT‑TGTCGGCCATTTTTTTTC‑CCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAAtgt < 2:278374/137‑1 (MQ=255) caaaaaaTCCTTCC‑GCGGGGGC‑TGTCTGCAAGTTATTTTC‑CCGCCGAAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAAtgt < 1:488181/137‑1 (MQ=255) aaTGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAAAAACTTTTAACCCCTCCTGTTGTGTGGGGATCGCTGCTGGTGAAAATGTGGa > 1:56257/1‑137 (MQ=255) ccTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCCAGAGAAAAAGAGTTAAAACCCGCCCGTTTTGTGGGGAACGCTGGTGGGAAAAAAGTGGGAAagg > 1:615255/1‑138 (MQ=255) ttC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGGAGGGAAAAAACTTTTAAACCGCCCCGTTTTGTGGGCATGGCTGGTGGGGAAAAAGTGGGAAGGGGAg > 2:436378/1‑139 (MQ=255) tC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGGAGGGAAAAAACTTTATACCCCCCCCGTTGTGTGGTGGACGCTGCTGGTAACAAAGTGGGAAggggaag > 2:362459/1‑135 (MQ=255) cggggcggt‑TGTCTGCCAG‑TATTTTTCCCGCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAg < 2:627591/134‑1 (MQ=255) ccggcgggc‑TGTCGCCCAGTTATTTTC‑CCCCCCCAAAAAACCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAg < 1:237742/131‑1 (MQ=255) tGTCGGCAAGTTTTTTTC‑CCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATc < 1:585020/139‑1 (MQ=255) gTCTGCCAGTTTTTTCC‑CCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATc < 2:56257/138‑1 (MQ=255) tctcCCAGTTTTTTTC‑CCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATc < 1:242951/137‑1 (MQ=255) tCTGCCAGTTATTTTC‑CCGCCACAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATc < 1:5263/137‑1 (MQ=255) tCTGCCAGCTATTTTC‑CCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATc < 1:63273/137‑1 (MQ=255) gcTGCCAGCTATTTCC‑CCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAAAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATc < 2:85115/136‑1 (MQ=255) cccgCCATCTATTTTC‑CCGCCGAAAAAAACCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATc < 2:171864/134‑1 (MQ=255) gCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAAAAACTTTTAACCCCTCATGTTTTGTGGGGATAGCCGCTTGGAAAAAAGTGGAAAAGGGAGAGGGGCGGAATAACTCCAg > 1:330107/1‑138 (MQ=255) aTTTTC‑CCCCCCCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAAc < 1:196649/138‑1 (MQ=255) tttc‑CCCCCCCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACcg < 2:586782/138‑1 (MQ=255) tttc‑CCACCCCAAAAAAGCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCACGGCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACcg < 1:146731/138‑1 (MQ=255) | GATAAGCGTAGCGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCG > NZ_CP009273/353453‑353725 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |