Read alignment evidence...
	seq id	position		ref	new	freq	score (cons/poly)	reads	annotation	genes	product
*	NZ_CP009273	353,601	0	C	A	43.5%	38.2 / 41.7	63	L267F (TTG→TTT)	cynR	transcriptional regulator CynR
Reads supporting (aligned to +/- strand):  ref base C (19/16);  new base A (0/27);  total (19/44)
Fisher's exact test for biased strand distribution p-value = 9.87e-07
Kolmogorov-Smirnov test that lower quality scores support variant p-value = 9.75e-01
Rejected as consensus: Frequency below/above cutoff threshold.

CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCG  >  NZ_CP009273/353464‑353725                                                                                                                                               |                                                                                                                             cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGcaac                                                                                                                              >  2:372159/1‑138 (MQ=255) cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGcaac                                                                                                                              >  2:390433/1‑138 (MQ=255) cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGcaac                                                                                                                              >  2:619171/1‑138 (MQ=255) cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGcaac                                                                                                                              >  2:488181/1‑138 (MQ=255) cgcATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGcaac                                                                                                                              >  2:249064/1‑138 (MQ=255)      cAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAAcc                                                                                                                        >  2:19830/1‑139 (MQ=255)      cAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAAcc                                                                                                                        >  1:85115/1‑139 (MQ=255)      cAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAAcc                                                                                                                        >  2:485319/1‑139 (MQ=255)      cAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAAcc                                                                                                                        >  2:124966/1‑139 (MQ=255)            atcccAGCCGCAGCCCTGTGCCGGCGGCCACCGTGTTTCATTCCCCCA‑AACACCCGCGCTTTTACCCAACGCCA‑TGTGAAAAAATGCCTTC‑GGGGCGGC‑TGTCTGCCAGCTATTTTC‑CCGCCGCAAAAAAACCGCCGtt                                                                                                                  <  1:249064/136‑1 (MQ=255)             ttCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAAC‑AAACCGCCGTtct                                                                                                                >  1:364519/1‑139 (MQ=255)               ccAGCCGCAGCCCTGTGCCAGCGGCTCCCGTGATTCATTCCCCCC‑AACACCCGCGCTTTTACCCACCCCCA‑TGTGAAAAAATGCCTTC‑GCGGCGGC‑TGTCGGCCAGTTATTTTC‑CCGCCGCAA‑AAAACCGCCGTtctc                                                                                                               <  2:364519/138‑1 (MQ=255)               ccACCCGCAGCCCTGTGTCAGCGGCTACCGTTTTTCATTCCCGCC‑AACACCCGCGCTTTTACCCACCCCCA‑TGTGCAAAAATGCCTTC‑GGGGCGGC‑TGTCTGCCAGCTTTTTTT‑CCGCCACAAAAAAACCGCCGTtctc                                                                                                               <  1:619171/139‑1 (MQ=18)                 cgCCGCAGCCCTGTGTCAGCGCCTCCCGTTATTCATCCCCCCC‑AACACCCGCGCTTTTACCCACCCCCT‑TGTAAAAAAATCCCTCC‑GGGGGGGC‑TTTCTGCCGGTTTTTTTC‑CCGCCGCAAAAAAACCGCCGTtctctc                                                                                                             <  2:563015/138‑1 (MQ=255)                 aGCCGCAGACTTGTGTCAGGGCCTACCGTAATTCATTTCCGCC‑AACACCCGCCCATTTACCCACCGCCA‑TGTGAAAAAATCCCTGC‑GCGGCGGC‑TTTCTGCCAGTTATTTTT‑CCGCCGCAACAAAACCGCCGTtctctc                                                                                                             <  1:124966/139‑1 (MQ=255)                  gCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTtctctc                                                                                                             >  2:658513/1‑138 (MQ=255)                    cGCAGCCTTGTGCCAGCGGCTACCGTATTTCATTCCCGCA‑ACCACCCGCGCTTTTACCCACCGCCT‑GGTGAAAAAATGCCTCC‑GCGGCGGC‑TGTCGGCCAGCTTTTTTC‑CCGCCGCAACAAAACCGCCGTTCTCTCCag                                                                                                          <  1:483619/139‑1 (MQ=255)                     gCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCTTTTACCCACCCCCA‑TGTGAAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTC‑CCGCCACAACAAAACCGCCGTTCTCTCCagt                                                                                                         <  1:152471/139‑1 (MQ=21)                             gtgtCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCgg                                                                                                 >  2:374570/1‑139 (MQ=255)                              tgtCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCggg                                                                                                >  2:74391/1‑139 (MQ=255)                                   gCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCggggggag                                                                                           >  2:416202/1‑135 (MQ=255)                                   gCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCggggg                                                                                              >  2:640411/1‑135 (MQ=255)                                    cGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCgggggacag                                                                                          >  1:263712/1‑134 (MQ=255)                                        tACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGGAGAGaa                                                                                       >  1:13112/1‑138 (MQ=255)                                         ccggttaTTCATCCCCGCC‑AACACCCCCGC‑TTTCTCCCACCCCATTGGGAAAAAGTCCCTCC‑GCGCCGGC‑TTTCGCCAATTTATTTTC‑CCGCCAAAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAAt                                                                                     <  2:521299/133‑1 (MQ=255)                                          ccttGATTCTTTCCCCCC‑AACCCCCTCGCTTTTACCCACCCCCA‑TTTGCAAAAATCCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGaaa                                                                                      <  1:637753/134‑1 (MQ=255)                                          accgtatttatttCCCCCAAACACCCGCTCTTTTACCAAACCCCA‑GGGGAAAAAAGGCCTTG‑GGGGCGGC‑TGTCGGCCAGTTTTTTTC‑CCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAAt                                                                                     <  1:395045/134‑1 (MQ=255)                                              taTTCTTTCCCCCC‑ACCACCCGCGCTTTTCCCCAACGCTT‑TGGGAAAAAGTGCCTTC‑GCGGGGGC‑TGTCTGCCAGTTTTTTTC‑CCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCt                                                                                 <  2:557114/137‑1 (MQ=255)                                               aTTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGATATTTTT‑CCGCCGCAACAAAAACGCCGTTCTCTCCAGTAGTGGCGGGGGACGAGgaaaaacat                                                                                >  2:146731/1‑132 (MQ=25)                                                  cATTCCCGCA‑AACACCCGCGCATTTATCCACCGCCA‑TGTGCAAAAAGGCCTCC‑GCGGCGGC‑TGTCTGCCAGCTATTTTC‑CCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTaa                                                                             <  1:523155/138‑1 (MQ=255)                                                   aTTCCCGCC‑ACCCCCCGCGCTTTTACCCACCGCCA‑TGTGAAAAATTGCCTTG‑GCGGCTGC‑TGTCTGCCACTTATTTTC‑CCGCCACAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGc                                                                           <  2:17709/139‑1 (MQ=255)                                                   aTTCCCGCC‑AACACCCGCGCATTTACCCAACGCCA‑TGTGAAAAAAGGCCTTG‑GGGGGGGC‑TGTCTGCCAGTTTTTTTT‑CCGCCGCAAAAAAGCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGc                                                                           <  1:485319/139‑1 (MQ=255)                                                     tcccccc‑AACAACCCCGCATTTCTCCACCGCCA‑TGTGAAAAAATGCCTTC‑GCGGCGGC‑TTTCTGCCAGTTTTTTTC‑CCCCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAg                                                                            <  1:46559/131‑1 (MQ=255)                                                     tcccGCC‑AACACCCCCCCTTTTACCCCACGCCT‑TGTGCAAAAATGCCTCC‑GCGGCGGC‑TGCCTGCCATTTTTTTTC‑CCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGc                                                                           <  2:120373/135‑1 (MQ=255)                                                        cccc‑accaCCCGCGCTTTTACCCACCCCCT‑TGTGAAAAAATGCCTCC‑GCGGCGGC‑TTTCTGCCAGTTATTTTC‑CCGCCGAAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTc                                                                      <  1:414614/137‑1 (MQ=255)                                                        cccc‑AACACCCCCGCTTTTACCCACCCCCA‑TGTG‑AAAAATGCCCTCGGGGGGGGC‑TGCCTGCCAGTTTTTTTC‑CCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTc                                                                      <  2:330023/137‑1 (MQ=255)                                                              acaccCGCGCTTTTACCCAACGCCA‑TGTGCAAAAATGCCTGC‑GCGGCGGC‑TGTCGGCCAGCTTTTTTC‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCAtgtt                                                                 <  1:390433/139‑1 (MQ=38)                                                                aacCGCGCTTTTATCAACCGCCA‑TTTGAAAAAATCCCTTG‑GCGGCGGC‑TGTCTGCCAGTTATTTTT‑CCGCCGAAACAAATCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCAtgttgt                                                               <  1:640411/139‑1 (MQ=255)                                                                    gcgcATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGGAGAGAAAAAACATTTAACCCCTCCtgtttttgtc                                                           >  1:407103/1‑133 (MQ=25)                                                                           tacccACCGCCT‑TGTCCAAAAATGCTTTC‑GCGGCGGC‑TGTCTGCAAGTTATTTTC‑CCCCCCCAAAAAATCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCg                                                     <  1:159379/135‑1 (MQ=255)                                                                           tacccACCGCCA‑TGTGAAAAAAGGCCTCC‑GGGGCGGC‑TGCCTGCCAGCTTTTTTC‑CCGCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCg                                                     <  2:69722/135‑1 (MQ=255)                                                                           tacccAACGCTG‑TGTAAAAAAAGGCCTCC‑G‑GGCGGCTTTTCTGCC‑GCTTTTTTTCCCGCCAAAAAAAACCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCg                                                     <  2:273372/135‑1 (MQ=255)                                                                           tacccAACCCCT‑TGTAAAAAAATGCCTCC‑GCGGCGGT‑TGTCTGCCAGTTTTTTTC‑CCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCg                                                     <  1:321323/135‑1 (MQ=255)                                                                              ccAACTCCT‑TGTCAAAAAATGCCTCC‑GCGGCGGC‑TGTCTGCCAGCTTTTTTC‑CCGCCACAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCgctgc                                                 <  1:174510/139‑1 (MQ=255)                                                                                   gCCA‑TGTGAAAAAATGCCTTC‑GCGGCGCC‑TTTCTGCCAGTTATTTTC‑CCCCCGAAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTa                                            <  1:416202/139‑1 (MQ=255)                                                                                    gcattgtcCAAAAATCCCTTC‑GGGGCGGT‑TGTCTGCCAGTTATTTTT‑CCCCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTa                                            <  1:640189/135‑1 (MQ=255)                                                                                    caa‑TGTACAAAAACGCCTTC‑GCGGCGGC‑TGTCGGCCACTTATTTTT‑CCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTaa                                           <  1:150743/137‑1 (MQ=255)                                                                                         gtccAAAATTCCCTTC‑CGGGCGGT‑TGTCTGCCAG‑TATTTTTCCCGCCCAACCAAATCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACaa                                        <  1:619934/135‑1 (MQ=255)                                                                                          tccAAAAATCCCTCC‑GGGGGGGT‑TGTCTGCCAGTTATTTTC‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAAt                                       <  1:135522/136‑1 (MQ=255)                                                                                           gaaaaaaGCCCTTC‑GCGGCGGT‑TGTCGGCCATTTTTTTTC‑CCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAAtgt                                     <  2:278374/137‑1 (MQ=255)                                                                                           caaaaaaTCCTTCC‑GCGGGGGC‑TGTCTGCAAGTTATTTTC‑CCGCCGAAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAAtgt                                     <  1:488181/137‑1 (MQ=255)                                                                                                aaTGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAAAAACTTTTAACCCCTCCTGTTGTGTGGGGATCGCTGCTGGTGAAAATGTGGa                                  >  1:56257/1‑137 (MQ=255)                                                                                                    ccTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCCAGAGAAAAAGAGTTAAAACCCGCCCGTTTTGTGGGGAACGCTGGTGGGAAAAAAGTGGGAAagg                             >  1:615255/1‑138 (MQ=255)                                                                                                      ttC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGGAGGGAAAAAACTTTTAAACCGCCCCGTTTTGTGGGCATGGCTGGTGGGGAAAAAGTGGGAAGGGGAg                          >  2:436378/1‑139 (MQ=255)                                                                                                       tC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGGGAGGGAAAAAACTTTATACCCCCCCCGTTGTGTGGTGGACGCTGCTGGTAACAAAGTGGGAAggggaag                         >  2:362459/1‑135 (MQ=255)                                                                                                         cggggcggt‑TGTCTGCCAG‑TATTTTTCCCGCCAAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAg                          <  2:627591/134‑1 (MQ=255)                                                                                                         ccggcgggc‑TGTCGCCCAGTTATTTTC‑CCCCCCCAAAAAACCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAg                          <  1:237742/131‑1 (MQ=255)                                                                                                                   tGTCGGCAAGTTTTTTTC‑CCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATc               <  1:585020/139‑1 (MQ=255)                                                                                                                    gTCTGCCAGTTTTTTCC‑CCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATc               <  2:56257/138‑1 (MQ=255)                                                                                                                     tctcCCAGTTTTTTTC‑CCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATc               <  1:242951/137‑1 (MQ=255)                                                                                                                     tCTGCCAGTTATTTTC‑CCGCCACAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATc               <  1:5263/137‑1 (MQ=255)                                                                                                                     tCTGCCAGCTATTTTC‑CCGCCGCAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATc               <  1:63273/137‑1 (MQ=255)                                                                                                                     gcTGCCAGCTATTTCC‑CCGCCGAAAAAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAAAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATc               <  2:85115/136‑1 (MQ=255)                                                                                                                     cccgCCATCTATTTTC‑CCGCCGAAAAAAACCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATc               <  2:171864/134‑1 (MQ=255)                                                                                                                            gCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAAAAACTTTTAACCCCTCATGTTTTGTGGGGATAGCCGCTTGGAAAAAAGTGGAAAAGGGAGAGGGGCGGAATAACTCCAg       >  1:330107/1‑138 (MQ=255)                                                                                                                               aTTTTC‑CCCCCCCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAAc    <  1:196649/138‑1 (MQ=255)                                                                                                                                 tttc‑CCCCCCCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACcg  <  2:586782/138‑1 (MQ=255)                                                                                                                                 tttc‑CCACCCCAAAAAAGCCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCACGGCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACcg  <  1:146731/138‑1 (MQ=255)                                                                                                                                               |                                                                                                                             CGCATCAGGCAATTCCAGCCGCAGACCTGTGTCAGCGGCTACCGTGATTCATTTCCGCC‑AACAACCGCGCATTTATCCAACGCCA‑TGTGCAAAAATGCCTTC‑GCGGCGGC‑TGTCTGCCAGCTATTTTT‑CCGCCGCAACAAAACCGCCGTTCTCTCCAGTAGTGGCGGGGCAAGAGAAATAGCTTTAAGCCCGTCATGTTGTGTGGCAATCGCTGCTGGTAACAATGTGGAAAGGGAAGTGCGGCGAATCAGCTCCAGAACCG  >  NZ_CP009273/353464‑353725

Alignment Legend
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 12 ≤ ATCG/ATCG < 13 ≤ ATCG/ATCG < 26 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG
Unaligned base: atcg    Masked matching base: atcg    Alignment gap: ‑    Deleted base: ‑