| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 2,030,709 | A→G | S309P (TCG→CCG) | hprS ← | two‑component system sensor histidine kinase HprS |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 2,030,709 | 0 | A | G | 100.0% | 104.8 / NA | 28 | S309P (TCG→CCG) | hprS | two‑component system sensor histidine kinase HprS |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base G (14/14); total (14/14) | |||||||||||
ACTCGACCTTAAAGCAAATCTCTTTCTCGTCTGAAAGGTATTCAAGATAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGAGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCT > NZ_CP009273/2030622‑2030794 | aCTCGACCTTAAAGCAAATCTCTTTCTCGTCTGAAAGGTATTCAAGATAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTc < 2:897586/91‑1 (MQ=255) aCCTTAAAGCAAATCTCTTTCTCGTCTGAAAGGTATTCAAGATAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGtt < 1:333380/91‑1 (MQ=255) cTTAAAGCAAATCTCTTTCTCGTCTGAAAGGTATTCAAGATAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTc < 1:228796/91‑1 (MQ=255) tAAAGCAAATCTCTTTTTCGTCTGAAAGGTATTCAAGATAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCAc < 1:1081157/91‑1 (MQ=255) aTCTCTTTCTCGTCTGAAAGGTATTCAAGATAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACAt < 2:834167/91‑1 (MQ=255) gTCTGAAAGGTATTCAAGATAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCt > 2:931212/1‑91 (MQ=255) tCTGAAAGGTATTCAAGATAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTg > 2:1027254/1‑91 (MQ=255) aaaGGTATTCAAGATAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCt < 2:898014/91‑1 (MQ=255) aTTCAAGATAGTCCAACAAATTTTCGACTTCCTTGTTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAg > 1:706138/1‑91 (MQ=255) aTTCAAGATAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAg > 1:269858/1‑91 (MQ=255) aTTCAAGATAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTCCCCTGGCAAg < 1:847706/91‑1 (MQ=255) ttCAAGATAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAGa < 1:352486/91‑1 (MQ=255) aTAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCt < 1:164696/78‑1 (MQ=255) aTAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCt > 2:164696/1‑78 (MQ=255) tAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAGAAACAGTa > 1:706234/1‑91 (MQ=255) tAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAGAAACAGTa < 1:323213/91‑1 (MQ=255) gTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACAt < 1:772276/59‑1 (MQ=255) gTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACAt > 2:772276/1‑59 (MQ=255) gTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAGAAACAGTATg > 1:88217/1‑91 (MQ=255) gTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAGAAACAGTATg > 2:1034148/1‑91 (MQ=255) ccAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAGAAACAGTATGtt < 1:415627/91‑1 (MQ=255) caacaaATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAGAAACAGTATGTtc > 1:456572/1‑91 (MQ=255) acaaATTTTCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAGAAACAGTATGTtctc > 1:353538/1‑91 (MQ=255) ttttCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAGaaa > 2:260879/1‑74 (MQ=255) ttttCGACTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAGaaa < 1:260879/74‑1 (MQ=255) cTTCCTTATTGAGAGAAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGa < 2:1062018/91‑1 (MQ=255) gagaAAGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAg > 1:685814/1‑91 (MQ=255) aaGCGGGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGctct > 1:1102114/1‑91 (MQ=255) | ACTCGACCTTAAAGCAAATCTCTTTCTCGTCTGAAAGGTATTCAAGATAGTCCAACAAATTTTCGACTTCCTTATTGAGAGAAAGCGAGTCCAGTTTCACCAAAACATTGTTTTTATCTGCCCTGGCAAGAAACAGTATGTTCTCTGTTAACCGCGAAATATTTTCCAGCTCT > NZ_CP009273/2030622‑2030794 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 32 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 36 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |