| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 4,395,910 | 2 bp→CC | intergenic (+108/‑96) | purA → / → nsrR | adenylosuccinate synthase/nitric oxide‑sensing transcriptional repressor NsrR |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 4,395,910 | 0 | T | C | 100.0% | 149.1 / NA | 40 | intergenic (+108/‑97) | purA/nsrR | adenylosuccinate synthase/nitric oxide‑sensing transcriptional repressor NsrR |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (27/13); total (27/13) | |||||||||||
| * | NZ_CP009273 | 4,395,911 | 0 | T | C | 100.0% | 146.6 / NA | 40 | intergenic (+109/‑96) | purA/nsrR | adenylosuccinate synthase/nitric oxide‑sensing transcriptional repressor NsrR |
| Reads supporting (aligned to +/- strand): ref base T (0/0); new base C (27/13); total (27/13) | |||||||||||
CAGTGTGATACATTGCTGTGTCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTTTCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCAATATAAATGTATTTTTTCCCGATTTC > NZ_CP009273/4395842‑4395991 || cAGTGTGATACATTGCTGTGTCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGaaataaa < 1:621683/91‑1 (MQ=255) tgATACATTGCTGTGTCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGc < 1:134134/91‑1 (MQ=255) cATTGCTGTGTCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGacac < 1:484131/91‑1 (MQ=255) ttGCTGTGTCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTttccccttcccc > 2:881474/1‑66 (MQ=255) ttGCTGTGTCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTttccccttcccc < 1:881474/66‑1 (MQ=255) ttGCTGTGTCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGacac > 1:423354/1‑89 (MQ=255) ttGCTGTGTCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGacac < 2:423354/89‑1 (MQ=255) ttGCTGTGTCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAg > 1:943486/1‑91 (MQ=255) ttGCTGTGTCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAg > 1:136672/1‑91 (MQ=255) ttGCTGTGTCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAg > 2:407486/1‑91 (MQ=255) ttGCTGTGTCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAg > 2:452299/1‑91 (MQ=255) ttGCTGTGTCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAg > 1:347533/1‑91 (MQ=255) gtgtCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTtgt > 2:602667/1‑91 (MQ=255) gtCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTgg > 1:798282/1‑91 (MQ=255) gtCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTgg > 2:207527/1‑91 (MQ=255) gtCGGGGAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTGCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTgg > 2:354119/1‑91 (MQ=255) tCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGc < 1:810775/91‑1 (MQ=255) cGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCt < 1:523424/91‑1 (MQ=255) gggTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTg < 2:481779/91‑1 (MQ=255) gggTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTg > 2:266750/1‑91 (MQ=255) gggTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTg < 2:721870/91‑1 (MQ=255) gggTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTCGTGGCTg < 2:1074079/91‑1 (MQ=255) ttACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTatcatc < 1:916930/91‑1 (MQ=255) ttACGCTATCCGACACAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTatcatc < 2:650146/91‑1 (MQ=255) gtACGCTATCCGACACAGTGGTAAATCCTCGGTTTTCCTCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCGGGTTTatcatc < 2:1000593/90‑1 (MQ=255) acacAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCaatataaatata > 2:387156/1‑91 (MQ=255) acacAGTGTTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCAATATAAATGTa > 1:818765/1‑91 (MQ=255) gtgtTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTatcatc < 1:445334/74‑1 (MQ=255) gtgtTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTatcatc > 2:445334/1‑74 (MQ=255) gtgtTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATTATCACTATAAATGTAttttt > 2:51477/1‑91 (MQ=255) gtgtTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCAATATAAATGTAttttt > 2:920052/1‑91 (MQ=255) gtgtTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCAATATAAATGTAttttt > 2:1045680/1‑91 (MQ=255) gtgtTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCAATATAAATGTAttttt > 1:155272/1‑91 (MQ=255) gtgtTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCAATATAAATGTAttttt > 1:550740/1‑91 (MQ=255) gtgtTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCAATATAAATGTAttttt > 1:721908/1‑91 (MQ=255) gtgtTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCAATATAAATGTAttttt > 2:285979/1‑91 (MQ=255) gtTAAATCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCAATATAAATGTATTTTTTc > 1:831514/1‑91 (MQ=255) aaaTCCTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCAATATAAATGTATTTTTTCCCg > 2:307010/1‑91 (MQ=255) cTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGacac > 1:825008/1‑42 (MQ=38) cTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGacac < 2:825008/42‑1 (MQ=38) cTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCAATATAAATGTATTTTTTCCCGATTTc > 1:792390/1‑91 (MQ=255) cTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCAATATAAATGTATTTTTTCCCGATTTc > 2:50512/1‑91 (MQ=255) cTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCAATATAAATGTATTTTTTCCCGATTTc > 1:956873/1‑91 (MQ=255) cTCGCTTTTCCCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCAATATAAATGTATTTTTTCCCGATTTc > 1:1049918/1‑91 (MQ=255) || CAGTGTGATACATTGCTGTGTCGGGTAAGCCATTACGCTATCCGACACAGTGTTAAATCCTCGCTTTTTTCCTTCCCCGAACTGAAATAAATTAGCGACACAGCTTGTGGCTGGTTTATCATCAATATAAATGTATTTTTTCCCGATTTC > NZ_CP009273/4395842‑4395991 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 20 ≤ ATCG/ATCG < 29 ≤ ATCG/ATCG < 35 ≤ ATCG/ATCG < 41 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |