| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,200,135 | (A)5→4 | pseudogene (279/1137 nt) | BW25113_RS05965 → | terminase large subunit |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,200,131 | 0 | A | . | 100.0% | 213.5 / NA | 48 | pseudogene (275/1137 nt) | BW25113_RS05965 | terminase large subunit |
| Reads supporting (aligned to +/- strand): ref base A (0/0); new base . (31/17); total (31/17) | |||||||||||
CAACATTGAGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTAAAACAAAACACCTCAATATCTGGGCG > NZ_CP009273/1199994‑1200255 | caacaTTGAGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGGa < 1:515591/138‑1 (MQ=255) gAGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGGaaaagccca > 2:741292/1‑134 (MQ=255) aGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAAt > 2:24546/1‑139 (MQ=255) aGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAAt > 1:444387/1‑139 (MQ=255) gggCCGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATcc < 1:113206/139‑1 (MQ=255) cGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCaaa > 1:499179/1‑138 (MQ=255) aaCGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCg > 2:102450/1‑139 (MQ=255) cggGAAGTCATCGAGATGCTCAACGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTa > 2:862824/1‑139 (MQ=255) aaCGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGt < 2:760648/137‑1 (MQ=255) ggTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTaa > 2:350245/1‑127 (MQ=255) ggTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTaa < 1:350245/127‑1 (MQ=255) tGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTaa < 2:112106/115‑1 (MQ=255) tGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTaa > 1:112106/1‑115 (MQ=255) tGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAAt > 2:293986/1‑138 (MQ=255) tGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAAt > 2:25242/1‑138 (MQ=255) tGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGGGCGAAAAAt > 1:826349/1‑138 (MQ=255) ttCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCg > 2:99600/1‑139 (MQ=255) ttCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCg > 2:736160/1‑139 (MQ=255) ttCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCg > 1:300493/1‑139 (MQ=255) tCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGt > 1:627274/1‑87 (MQ=255) tCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGt < 2:627274/87‑1 (MQ=255) tcTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTaa < 1:607333/98‑1 (MQ=255) tcTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTaa > 2:607333/1‑98 (MQ=255) tcTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAAc > 2:694575/1‑139 (MQ=255) taCCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGTAAAc < 1:519534/135‑1 (MQ=255) ttGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATcc < 1:332701/51‑1 (MQ=255) ttGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATcc > 2:332701/1‑51 (MQ=255) ttGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTaa < 1:512716/89‑1 (MQ=255) ttGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTaa > 2:512716/1‑89 (MQ=255) ttGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACg > 2:322010/1‑116 (MQ=255) ttGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACg < 1:322010/116‑1 (MQ=255) ttGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTaa > 2:297049/1‑138 (MQ=255) ttGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTaa > 2:751410/1‑138 (MQ=255) ttGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTaa > 1:287645/1‑138 (MQ=255) ttGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTaa > 1:846980/1‑138 (MQ=255) gatgaAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAAt > 1:134403/1‑47 (MQ=255) gatgaAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAAt < 2:134403/47‑1 (MQ=255) gatgaAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTaaaa > 1:460371/1‑138 (MQ=255) tgaAGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTaaaacaa < 1:862824/139‑1 (MQ=255) aaGGTGACGACTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTaaaacaaaa < 1:856041/139‑1 (MQ=255) acgacTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGt > 2:505811/1‑74 (MQ=255) acgacTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGt < 1:505811/74‑1 (MQ=255) acgacTGGACCGACCCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTAAAACAAAACACCt < 2:444387/138‑1 (MQ=255) ccgaccCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTAAAACAAAACACCTCAATATCTgg < 1:24546/139‑1 (MQ=255) acgcGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGAGAAAAATAACGCCCGTCTGGCAAACGTCTTTAAAACAAAACACCTCAATATCTGGGCg > 2:865793/4‑139 (MQ=255) accCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTaa < 2:645284/65‑1 (MQ=255) accCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTaa > 1:645284/1‑65 (MQ=255) accCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTAAAACAAAACACCTCAATATCTGGGCg > 2:512930/1‑139 (MQ=255) accCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTAAAACAAAACACCTCAATATCTGGGCg > 1:390633/1‑139 (MQ=255) accCGCAGGTGCTGG‑AAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTAAAACAAAACACCTCAATATCTGGGCg > 2:312998/1‑139 (MQ=255) | CAACATTGAGGGGCCGTGCTACGACAAACGGCGGGAAGTCATCGAGATGCTCAACGGCTCGGTGCCAAACGATGAACTGTTCGGGATCATCTATACCGTTGATGAAGGTGACGACTGGACCGACCCGCAGGTGCTGGAAAAAGCCAATCCAAATATTGGCGTGTCGGTTTATCGCGAATTTTTGTTAAGTCAGCAGCAGCGTGCGAAAAATAACGCCCGTCTGGCAAACGTCTTTAAAACAAAACACCTCAATATCTGGGCG > NZ_CP009273/1199994‑1200255 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 16 ≤ ATCG/ATCG < 34 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |