| Predicted mutation | ||||||
|---|---|---|---|---|---|---|
| evidence | seq id | position | mutation | annotation | gene | description |
| RA | NZ_CP009273 | 1,461,422 | (G)5→4 | pseudogene (1774/2526 nt) | BW25113_RS07350 → | autotransporter domain‑containing protein |
| Read alignment evidence... | |||||||||||
|---|---|---|---|---|---|---|---|---|---|---|---|
| seq id | position | ref | new | freq | score (cons/poly) | reads | annotation | genes | product | ||
| * | NZ_CP009273 | 1,461,418 | 0 | G | . | 100.0% | 108.3 / NA | 25 | pseudogene (1770/2526 nt) | BW25113_RS07350 | autotransporter domain‑containing protein |
| Reads supporting (aligned to +/- strand): ref base G (0/0); new base . (14/11); total (14/11) | |||||||||||
AATCTGGATGGTAGCCTGACTGTTACAGGCGGTGCGCATGGTGTTGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACCAACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGACCGGGG > NZ_CP009273/1461284‑1461545 | aaTCTGGATGGTAGCCTGACTGTTACAGGCGGTGCGCATGGTGTTGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAgggg < 2:39723/138‑1 (MQ=255) gATGGTAGCCTGACTGTTACAGGCGGTGCGCATGGTGTTGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACa < 2:462116/137‑1 (MQ=255) tGCGCATGGTGTTGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGt > 1:65976/1‑137 (MQ=255) tGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAggggcaa < 2:658640/97‑4 (MQ=255) tGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAggggcaa > 1:658640/1‑94 (MQ=255) agaACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACa < 2:506322/139‑1 (MQ=255) agaACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACa < 1:125334/139‑1 (MQ=255) aTTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGTCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGtt > 1:823010/1‑139 (MQ=255) aTTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGtt > 1:792165/1‑139 (MQ=255) aTTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGtt > 2:642962/1‑139 (MQ=255) aTTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGtt > 1:438310/1‑139 (MQ=255) aTTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGtt > 2:804107/1‑139 (MQ=255) aacaaAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAggggcaa < 2:327569/66‑4 (MQ=255) aacaaAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAggggcaa > 1:327569/1‑63 (MQ=255) aGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATg < 2:167994/82‑1 (MQ=255) aGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATg > 1:167994/1‑82 (MQ=255) aGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACCAACAGTGGGAAGGttt > 2:139386/1‑139 (MQ=255) atatTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACCAACAGTGGGAAGGTTTCGCTg > 2:700384/1‑139 (MQ=255) ttgttgTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACCAACAGTGGGAAGGTTTCGCTggc < 1:700384/138‑1 (MQ=255) ttgttTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACCAACAGTGGGAAGGTTTCGCTggcagg < 2:792165/138‑1 (MQ=255) tACTGGATCGATTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACCAACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAgg > 2:323555/1‑139 (MQ=255) aTTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGt < 2:170608/47‑1 (MQ=255) aTTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGt > 1:170608/1‑47 (MQ=255) aTTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACCAACAGTGGGAAGGTTTCGCTggc > 2:537074/1‑115 (MQ=255) aTTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACCAACAGTGGGAAGGTTTCGCTggc < 1:537074/115‑1 (MQ=255) aTTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACCAACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGAttt > 2:329542/1‑139 (MQ=255) aTTGGCGTGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACCAACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGAttt > 1:329478/1‑139 (MQ=255) atGCTCATCAACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACCAACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGAc < 2:329478/138‑1 (MQ=255) atcaACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGTGTTCAGCATCACAACCAACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGACCgggg < 2:833897/138‑1 (MQ=255) atcaACGGTGA‑GGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACCAACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGACCgggg < 1:606256/138‑1 (MQ=255) | AATCTGGATGGTAGCCTGACTGTTACAGGCGGTGCGCATGGTGTTGAGAACATTGGTGACAACGGCACGGTTAACAACAAAGGAGATATTGTTGTTTCCGATACTGGATCGATTGGCGTGCTCATCAACGGTGAGGGGGCAACAGTATCCAATACGGGTGATGTTAACGTTAGCAATGAAGCGACAGGGTTCAGCATCACAACCAACAGTGGGAAGGTTTCGCTGGCAGGCAGTATGCAGGTTGGCGATTTCTCGACCGGGG > NZ_CP009273/1461284‑1461545 |
| Alignment Legend |
|---|
Aligned base mismatch/match (shaded by quality score): ATCG/ATCG < 3 ≤ ATCG/ATCG < 33 ≤ ATCG/ATCG < 37 ≤ ATCG/ATCG < 38 ≤ ATCG/ATCG < 39 ≤ ATCG/ATCG |
Unaligned base: atcg Masked matching base: atcg Alignment gap: ‑ Deleted base: ‑ |